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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10274 and 10275 are separated by 3747 nucleotides
10275 and 10276 are separated by 1345 nucleotides
10276 and 10277 are separated by 581 nucleotides
10277 and 10278 are separated by 180 nucleotides
mRNA_1906: 10274 - KOG0627 Heat shock transcription factor, at 483,012 to 484,134
10274
mRNA_1907: 10275 - Hypothetical Protein, at 487,882 to 489,189
10275
mRNA_1908: 10276 - K01426 E3.5.1.4, amiE amidase, at 490,535 to 492,598
10276
mRNA_1909: 10277 - K01426 E3.5.1.4, amiE amidase, at 493,180 to 495,383
10277
mRNA_1910: 10278 - HMMPfam-Domain of unknown function (DUF2427)-PF10348,HMMPfam-Protein of unknown function (Ytp1)-PF10355, at 495,564 to 497,825
10278
Group
Condition
mRNA
_1906
mRNA
_1907
mRNA
_1908
mRNA
_1909
mRNA
_1910
10274
10275
10276
10277
10278
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.7
N.D.
-0.3
-0.2
-0.4
growth on oleic acid
YNB Oleic Acid
-2.0
N.D.
-0.6
-0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.6
N.D.
+0.2
-0.3
-0.1
growth on oleic acid
YNB Glucose
-2.0
N.D.
-0.7
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-2.0
N.D.
-0.5
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-1.7
N.D.
-0.3
-0.2
-0.0
growth on ricinoleic acid
YNB Glucose
-1.4
N.D.
-0.0
-0.5
-0.2
auxotrophy
Dropout Complete
-1.6
N.D.
-0.2
-0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-2.4
N.D.
+0.0
+0.4
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.7
N.D.
+0.1
+0.4
-0.4
auxotrophy
YNB Glucose
-1.3
N.D.
-0.1
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-1.3
N.D.
+0.1
-0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
-1.0
N.D.
+0.1
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.6
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
-0.5
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.6
N.D.
+0.2
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
-0.1
+0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
N.D.
+0.2
+0.5
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
+0.1
+0.3
-0.1
growth on ypd
YPD
-0.5
N.D.
+0.1
+0.6
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
N.D.
+0.5
+0.6
+0.1
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