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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10276 and 10277 are separated by 581 nucleotides
10277 and 10278 are separated by 180 nucleotides
10278 and 10279 are separated by 167 nucleotides
10279 and 10280 are separated by 331 nucleotides
mRNA_1908: 10276 - K01426 E3.5.1.4, amiE amidase, at 490,535 to 492,598
10276
mRNA_1909: 10277 - K01426 E3.5.1.4, amiE amidase, at 493,180 to 495,383
10277
mRNA_1910: 10278 - HMMPfam-Domain of unknown function (DUF2427)-PF10348,HMMPfam-Protein of unknown function (Ytp1)-PF10355, at 495,564 to 497,825
10278
mRNA_1911: 10279 - K14967 BRE2, CPS60 COMPASS component BRE2, at 497,993 to 499,871
10279
mRNA_1912: 10280 - K04450 ATF2, CREBP1 cyclic AMP-dependent transcription factor ATF-2, at 500,203 to 502,614
10280
Group
Condition
mRNA
_1908
mRNA
_1909
mRNA
_1910
mRNA
_1911
mRNA
_1912
10276
10277
10278
10279
10280
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
-0.1
+0.1
-2.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.4
-0.4
-1.9
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
+0.0
-0.0
-1.0
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.3
-0.1
-0.9
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.5
-0.3
-1.1
+0.2
growth on ricinoleic acid
YNB Glucose
-0.0
-0.5
-0.2
-0.0
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.4
+0.1
-0.3
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.1
-0.1
+0.4
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.0
+0.0
-0.4
+0.1
growth on oleic acid
YNB Glucose
-0.7
+0.2
-0.1
+0.0
+0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
+0.0
-0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.6
+0.1
-0.1
-0.8
growth on oleic acid
YNB Oleic Acid
-0.6
-0.1
-0.1
+0.7
+0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.2
-0.2
+0.3
+0.0
growth on ypd
YPD
+0.1
+0.6
+0.3
-0.3
+0.2
auxotrophy
YNB Glucose
-0.1
-0.3
+0.1
+0.2
+1.1
auxotrophy
Dropout Complete
-0.2
-0.1
+0.0
+0.4
+0.9
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.2
-0.0
+0.4
+1.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.2
+0.0
+0.5
+0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.2
-0.4
+1.2
+1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.3
-0.1
+1.3
+0.3
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