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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10277 and 10278 are separated by 180 nucleotides
10278 and 10279 are separated by 167 nucleotides
10279 and 10280 are separated by 331 nucleotides
10280 and 10281 are separated by 578 nucleotides
mRNA_1909: 10277 - K01426 E3.5.1.4, amiE amidase, at 493,180 to 495,383
10277
mRNA_1910: 10278 - HMMPfam-Domain of unknown function (DUF2427)-PF10348,HMMPfam-Protein of unknown function (Ytp1)-PF10355, at 495,564 to 497,825
10278
mRNA_1911: 10279 - K14967 BRE2, CPS60 COMPASS component BRE2, at 497,993 to 499,871
10279
mRNA_1912: 10280 - K04450 ATF2, CREBP1 cyclic AMP-dependent transcription factor ATF-2, at 500,203 to 502,614
10280
mRNA_1913: 10281 - K04564 SOD2 superoxide dismutase, Fe-Mn family, at 503,193 to 504,426
10281
Group
Condition
mRNA
_1909
mRNA
_1910
mRNA
_1911
mRNA
_1912
mRNA
_1913
10277
10278
10279
10280
10281
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.1
-2.1
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.4
-1.9
-0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.1
-0.9
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.0
-1.0
+0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-0.3
-1.1
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.1
-0.3
-0.4
N.D.
growth on ricinoleic acid
YNB Glucose
-0.5
-0.2
-0.0
+0.4
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.0
-0.4
+0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
+0.1
-0.1
-0.8
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.2
+0.3
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.0
-0.1
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.1
+0.4
+0.2
N.D.
growth on ypd
YPD
+0.6
+0.3
-0.3
+0.2
N.D.
growth on oleic acid
YNB Glucose
+0.2
-0.1
+0.0
+0.7
N.D.
auxotrophy
YNB Glucose
-0.3
+0.1
+0.2
+1.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
+0.7
+0.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.0
+0.5
+0.8
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.1
+1.3
+0.3
N.D.
auxotrophy
Dropout Complete
-0.1
+0.0
+0.4
+0.9
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.0
+0.4
+1.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.4
+1.2
+1.0
N.D.
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