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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10279 and 10280 are separated by 331 nucleotides
10280 and 10281 are separated by 578 nucleotides
10281 and 10282 are separated by 309 nucleotides
10282 and 10283 are separated by 552 nucleotides
mRNA_1911: 10279 - K14967 BRE2, CPS60 COMPASS component BRE2, at 497,993 to 499,871
10279
mRNA_1912: 10280 - K04450 ATF2, CREBP1 cyclic AMP-dependent transcription factor ATF-2, at 500,203 to 502,614
10280
mRNA_1913: 10281 - K04564 SOD2 superoxide dismutase, Fe-Mn family, at 503,193 to 504,426
10281
mRNA_1914: 10282 - K07942 ARL1 ADP-ribosylation factor-like protein 1, at 504,736 to 505,677
10282
mRNA_1915: 10283 - K03063 PSMC4, RPT3 26S proteasome regulatory subunit T3, at 506,230 to 507,925
10283
Group
Condition
mRNA
_1911
mRNA
_1912
mRNA
_1913
mRNA
_1914
mRNA
_1915
10279
10280
10281
10282
10283
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.9
-0.0
N.D.
-1.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-2.1
+0.1
N.D.
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-1.1
+0.2
N.D.
-0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
+0.1
N.D.
-0.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.8
N.D.
-0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.1
N.D.
-0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.4
N.D.
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.0
+0.4
N.D.
+0.7
N.D.
growth on ypd
YPD
-0.3
+0.2
N.D.
+0.4
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.0
N.D.
+0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
+0.4
N.D.
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.2
N.D.
+0.1
N.D.
growth on oleic acid
YNB Glucose
+0.0
+0.7
N.D.
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.3
N.D.
+0.5
N.D.
growth on oleic acid
YNB Oleic Acid
+0.7
+0.5
N.D.
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+1.2
N.D.
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.8
N.D.
+0.5
N.D.
auxotrophy
YNB Glucose
+0.2
+1.1
N.D.
+0.7
N.D.
auxotrophy
Dropout Complete
+0.4
+0.9
N.D.
+0.7
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.3
+0.3
N.D.
+0.8
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.2
+1.0
N.D.
+0.8
N.D.
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