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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10283 and 10284 are separated by 78 nucleotides
10284 and 10285 are separated by 301 nucleotides
10285 and 10286 are separated by 1384 nucleotides
10286 and 10287 are separated by 472 nucleotides
mRNA_1915: 10283 - K03063 PSMC4, RPT3 26S proteasome regulatory subunit T3, at 506,230 to 507,925
10283
mRNA_1916: 10284 - HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Domain of unknown function (DUF3425)-PF11905,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 508,004 to 509,890
10284
mRNA_1917: 10285 - K04488 iscU, nifU nitrogen fixation protein NifU and related proteins, at 510,192 to 511,246
10285
mRNA_1918: 10286 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 512,631 to 512,981
10286
mRNA_1919: 10287 - K11340 ACTL6A, INO80K actin-like protein 6A, at 513,454 to 515,296
10287
Group
Condition
mRNA
_1915
mRNA
_1916
mRNA
_1917
mRNA
_1918
mRNA
_1919
10283
10284
10285
10286
10287
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-1.5
N.D.
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.0
N.D.
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.8
N.D.
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.3
N.D.
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
N.D.
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.1
N.D.
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.0
N.D.
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
N.D.
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
-0.0
N.D.
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
N.D.
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
N.D.
N.D.
N.D.
auxotrophy
YNB Glucose
N.D.
+0.3
N.D.
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.3
N.D.
N.D.
N.D.
growth on ypd
YPD
N.D.
+0.3
N.D.
N.D.
N.D.
growth on oleic acid
YNB Glucose
N.D.
+0.3
N.D.
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.4
N.D.
N.D.
N.D.
auxotrophy
Dropout Complete
N.D.
+0.5
N.D.
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.6
N.D.
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.6
N.D.
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.8
N.D.
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.9
N.D.
N.D.
N.D.
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