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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10286 and 10287 are separated by 472 nucleotides
10287 and 10288 are separated by 305 nucleotides
10288 and 10289 are separated by 638 nucleotides
10289 and 10290 are separated by 36 nucleotides
mRNA_1918: 10286 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 512,631 to 512,981
10286
mRNA_1919: 10287 - K11340 ACTL6A, INO80K actin-like protein 6A, at 513,454 to 515,296
10287
mRNA_1920: 10288 - Hypothetical Protein, at 515,602 to 517,203
10288
mRNA_1921: 10289 - KOG4373 Predicted 3'-5' exonuclease, at 517,842 to 518,810
10289
mRNA_1922: 10290 - Hypothetical Protein, at 518,847 to 519,239
10290
Group
Condition
mRNA
_1918
mRNA
_1919
mRNA
_1920
mRNA
_1921
mRNA
_1922
10286
10287
10288
10289
10290
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.4
-2.8
-2.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.2
-1.1
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.1
-1.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.0
+0.5
-1.6
auxotrophy
Dropout Complete
N.D.
N.D.
-0.3
-1.2
+0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.7
-0.3
-0.0
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.0
-0.2
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.7
-2.2
+0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.3
-0.6
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
+0.0
-0.6
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
+0.1
-0.7
auxotrophy
YNB Glucose
N.D.
N.D.
-0.3
-0.4
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.5
-0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.4
+0.0
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.3
+0.1
+0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.4
-0.2
-0.3
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.2
+0.2
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.7
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.5
-0.2
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.9
-0.1
+0.6
growth on ypd
YPD
N.D.
N.D.
-0.4
+1.5
+1.2
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