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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10288 and 10289 are separated by 638 nucleotides
10289 and 10290 are separated by 36 nucleotides
10290 and 10291 are separated by 219 nucleotides
10291 and 10292 are separated by 222 nucleotides
mRNA_1920: 10288 - Hypothetical Protein, at 515,602 to 517,203
10288
mRNA_1921: 10289 - KOG4373 Predicted 3'-5' exonuclease, at 517,842 to 518,810
10289
mRNA_1922: 10290 - Hypothetical Protein, at 518,847 to 519,239
10290
mRNA_1923: 10291 - K19787 CARNMT1 carnosine N-methyltransferase, at 519,459 to 521,071
10291
mRNA_1924: 10292 - K00763 pncB, NAPRT1 nicotinate phosphoribosyltransferase, at 521,294 to 523,495
10292
Group
Condition
mRNA
_1920
mRNA
_1921
mRNA
_1922
mRNA
_1923
mRNA
_1924
10288
10289
10290
10291
10292
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-2.8
-2.2
+0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-1.2
-0.3
-0.2
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-1.1
-0.4
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.5
-1.6
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.1
+0.3
-0.5
-0.1
auxotrophy
Dropout Complete
-0.3
-1.2
+0.4
+0.0
+0.2
growth on oleic acid
YNB Oleic Acid
-0.0
-0.2
-0.7
+0.1
+0.0
auxotrophy
YNB Glucose
-0.3
-0.4
+0.3
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
-2.2
+0.8
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.7
-0.3
-0.0
+0.0
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.6
+0.2
+0.5
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
-0.7
-0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
-0.6
-0.0
+0.1
growth on oleic acid
YNB Glucose
+0.4
-0.2
-0.3
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
-0.2
+0.1
-0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.1
+0.1
+0.6
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.0
+0.3
+0.8
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.2
+0.4
+0.0
+0.3
growth on ricinoleic acid
YNB Glucose
-0.2
+0.2
+0.6
+0.5
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.9
-0.1
+0.6
-0.1
+0.2
growth on ypd
YPD
-0.4
+1.5
+1.2
-0.2
-0.0
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