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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10290 and 10291 are separated by 219 nucleotides
10291 and 10292 are separated by 222 nucleotides
10292 and 10293 are separated by 166 nucleotides
10293 and 10294 are separated by 221 nucleotides
mRNA_1922: 10290 - Hypothetical Protein, at 518,847 to 519,239
10290
mRNA_1923: 10291 - K19787 CARNMT1 carnosine N-methyltransferase, at 519,459 to 521,071
10291
mRNA_1924: 10292 - K00763 pncB, NAPRT1 nicotinate phosphoribosyltransferase, at 521,294 to 523,495
10292
mRNA_1925: 10293 - K13239 PECI peroxisomal 3,2-trans-enoyl-CoA isomerase, at 523,662 to 525,143
10293
mRNA_1926: 10294 - HMMPfam-GDSL-like Lipase/Acylhydrolase family-PF13472,SUPERFAMILY--SSF52266, at 525,365 to 527,827
10294
Group
Condition
mRNA
_1922
mRNA
_1923
mRNA
_1924
mRNA
_1925
mRNA
_1926
10290
10291
10292
10293
10294
ypd buoyancy
40 hrs No Buoyancy Separation
-2.2
+0.1
-0.2
-0.4
-0.1
ypd buoyancy
40 hrs High Buoyancy
-1.6
-0.1
+0.0
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
-0.7
+0.1
+0.0
-0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.6
-0.0
+0.1
-0.1
-0.4
growth on oleic acid
YNB Glucose
-0.3
-0.0
+0.0
-0.4
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.7
-0.3
+0.2
+0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.2
-0.6
+0.2
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.5
-0.1
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.0
-0.2
+0.1
+0.1
growth on ypd
YPD
+1.2
-0.2
-0.0
-0.7
+0.0
auxotrophy
YNB Glucose
+0.3
-0.4
-0.1
+0.0
+0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.0
+0.3
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.1
+0.1
-0.0
+0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.5
-0.4
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.0
+0.3
-0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.6
+0.0
-0.6
+0.5
auxotrophy
Dropout Complete
+0.4
+0.0
+0.2
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
-0.1
+0.2
+0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.8
+0.2
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.8
-0.1
+0.1
+0.2
+0.4
growth on ricinoleic acid
YNB Glucose
+0.6
+0.5
+0.2
-0.1
+0.3
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