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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10291 and 10292 are separated by 222 nucleotides
10292 and 10293 are separated by 166 nucleotides
10293 and 10294 are separated by 221 nucleotides
10294 and 10295 are separated by 572 nucleotides
mRNA_1923: 10291 - K19787 CARNMT1 carnosine N-methyltransferase, at 519,459 to 521,071
10291
mRNA_1924: 10292 - K00763 pncB, NAPRT1 nicotinate phosphoribosyltransferase, at 521,294 to 523,495
10292
mRNA_1925: 10293 - K13239 PECI peroxisomal 3,2-trans-enoyl-CoA isomerase, at 523,662 to 525,143
10293
mRNA_1926: 10294 - HMMPfam-GDSL-like Lipase/Acylhydrolase family-PF13472,SUPERFAMILY--SSF52266, at 525,365 to 527,827
10294
mRNA_1927: 10295 - K19691 NIK1, TCSC osomolarity two-component system, sensor histidine kinase NIK1, at 528,400 to 533,209
10295
Group
Condition
mRNA
_1923
mRNA
_1924
mRNA
_1925
mRNA
_1926
mRNA
_1927
10291
10292
10293
10294
10295
growth on ypd
YPD
-0.2
-0.0
-0.7
+0.0
-0.1
growth on oleic acid
YNB Glucose
-0.0
+0.0
-0.4
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.1
-0.1
+0.4
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.2
+0.0
+0.1
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
-0.4
+0.0
+0.1
-0.7
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.0
-0.1
+0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
-0.1
-0.4
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
+0.0
-0.3
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.3
-0.0
-0.2
-0.4
auxotrophy
YNB Glucose
-0.4
-0.1
+0.0
+0.5
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.2
-0.4
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.2
+0.1
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.3
-0.1
+0.2
-0.4
auxotrophy
Dropout Complete
+0.0
+0.2
-0.1
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
+0.2
+0.4
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.2
+0.1
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
+0.0
-0.6
+0.5
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.6
+0.2
+0.6
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
-0.0
+0.7
-0.2
growth on ricinoleic acid
YNB Glucose
+0.5
+0.2
-0.1
+0.3
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.8
+0.2
-0.3
+0.3
+0.2
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