Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
10294 and 10295 are separated by 572 nucleotides
10295 and 10296 are separated by 1087 nucleotides
10296 and 10297 are separated by 1100 nucleotides
10297 and 10298 are separated by 346 nucleotides
mRNA_1926: 10294 - HMMPfam-GDSL-like Lipase/Acylhydrolase family-PF13472,SUPERFAMILY--SSF52266, at 525,365 to 527,827
10294
mRNA_1927: 10295 - K19691 NIK1, TCSC osomolarity two-component system, sensor histidine kinase NIK1, at 528,400 to 533,209
10295
mRNA_1928: 10296 - Hypothetical Protein, at 534,297 to 534,878
10296
mRNA_1929: 10297 - K07880 RAB4B Ras-related protein Rab-4B, at 535,979 to 537,358
10297
mRNA_1930: 10298 - KOG1634 Predicted transcription factor DATF1, contains PHD and TFS2M domains, at 537,705 to 541,731
10298
Group
Condition
mRNA
_1926
mRNA
_1927
mRNA
_1928
mRNA
_1929
mRNA
_1930
10294
10295
10296
10297
10298
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.7
+0.1
-1.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.7
+0.0
-0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.4
-0.1
-0.1
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.4
-0.0
+0.2
N.D.
growth on oleic acid
YNB Glucose
-0.1
-0.3
-0.3
+0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.3
-0.3
+0.1
N.D.
growth on ypd
YPD
+0.0
-0.1
+0.2
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.2
-0.4
+0.4
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
-0.1
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.4
-0.3
+0.6
N.D.
auxotrophy
Dropout Complete
+0.2
-0.3
-0.4
+0.7
N.D.
growth on ricinoleic acid
YNB Glucose
+0.3
-0.3
-0.1
+0.4
N.D.
auxotrophy
YNB Glucose
+0.5
-0.4
-0.5
+0.7
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.7
-0.2
+0.3
-0.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.2
-0.0
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.3
-0.4
+0.9
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.1
+0.2
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.2
+0.3
+0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.2
-0.1
+0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-0.1
-0.1
+0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
+0.5
+0.3
-0.6
N.D.
remove
mRNA_1926
plot
remove
mRNA_1927
plot
remove
mRNA_1928
remove
mRNA_1929
plot
remove
mRNA_1930
plot