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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10295 and 10296 are separated by 1087 nucleotides
10296 and 10297 are separated by 1100 nucleotides
10297 and 10298 are separated by 346 nucleotides
10298 and 10299 are separated by 1044 nucleotides
mRNA_1927: 10295 - K19691 NIK1, TCSC osomolarity two-component system, sensor histidine kinase NIK1, at 528,400 to 533,209
10295
mRNA_1928: 10296 - Hypothetical Protein, at 534,297 to 534,878
10296
mRNA_1929: 10297 - K07880 RAB4B Ras-related protein Rab-4B, at 535,979 to 537,358
10297
mRNA_1930: 10298 - KOG1634 Predicted transcription factor DATF1, contains PHD and TFS2M domains, at 537,705 to 541,731
10298
mRNA_1931: 10299 - KOG2112 Lysophospholipase, at 542,776 to 544,439
10299
Group
Condition
mRNA
_1927
mRNA
_1928
mRNA
_1929
mRNA
_1930
mRNA
_1931
10295
10296
10297
10298
10299
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
+0.1
-1.0
N.D.
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.7
+0.0
-0.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.0
+0.2
N.D.
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.3
-0.4
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
-0.3
-0.1
+0.4
N.D.
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
+0.4
N.D.
-0.8
auxotrophy
Dropout Complete
-0.3
-0.4
+0.7
N.D.
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.3
+0.1
N.D.
-0.1
growth on oleic acid
YNB Glucose
-0.3
-0.3
+0.3
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.4
+0.4
N.D.
-0.1
auxotrophy
YNB Glucose
-0.4
-0.5
+0.7
N.D.
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
+0.0
N.D.
+0.0
growth on ypd
YPD
-0.1
+0.2
-0.2
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.1
+0.3
N.D.
-0.5
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
+0.3
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.3
+0.6
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.4
+0.9
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.3
+0.3
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
+0.3
-0.6
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.2
+0.3
N.D.
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.0
+0.3
N.D.
+0.1
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