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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10297 and 10298 are separated by 346 nucleotides
10298 and 10299 are separated by 1044 nucleotides
10299 and 10300 are separated by 287 nucleotides
10300 and 10301 are separated by 435 nucleotides
mRNA_1929: 10297 - K07880 RAB4B Ras-related protein Rab-4B, at 535,979 to 537,358
10297
mRNA_1930: 10298 - KOG1634 Predicted transcription factor DATF1, contains PHD and TFS2M domains, at 537,705 to 541,731
10298
mRNA_1931: 10299 - KOG2112 Lysophospholipase, at 542,776 to 544,439
10299
mRNA_1932: 10300 - BLAST family 69 glycosyltransferase [Melampsora larici-..., at 544,727 to 545,015
10300
mRNA_1933: 10301 - Hypothetical Protein, at 545,451 to 545,690
10301
Group
Condition
mRNA
_1929
mRNA
_1930
mRNA
_1931
mRNA
_1932
mRNA
_1933
10297
10298
10299
10300
10301
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
N.D.
-0.5
-0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
N.D.
+0.1
-0.6
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
N.D.
-0.8
-0.7
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
N.D.
-0.5
-0.7
+0.2
growth on ricinoleic acid
YNB Glucose
+0.4
N.D.
-0.5
-0.6
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.3
N.D.
-0.1
+0.3
-0.3
growth on oleic acid
YNB Oleic Acid
+0.3
N.D.
-0.1
-0.5
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
N.D.
+0.1
+0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
N.D.
-0.3
+0.5
+0.1
growth on oleic acid
YNB Glucose
+0.3
N.D.
+0.0
-0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
-0.1
+0.3
-0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
+0.0
+0.4
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
-0.6
+0.6
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
N.D.
-0.1
+0.7
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
N.D.
+0.0
-0.0
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
N.D.
-0.1
-0.1
+0.6
auxotrophy
YNB Glucose 75mM Methionine
+0.6
N.D.
+0.2
+0.2
+0.4
auxotrophy
Dropout Complete
+0.7
N.D.
-0.5
+0.7
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.9
N.D.
-0.1
+0.3
+0.5
auxotrophy
YNB Glucose
+0.7
N.D.
+0.0
+0.4
+0.6
growth on ypd
YPD
-0.2
N.D.
-0.0
+3.7
+0.2
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