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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10303 and 10304 are separated by 341 nucleotides
10304 and 10305 are separated by 559 nucleotides
10305 and 10306 are separated by 551 nucleotides
10306 and 10307 are separated by 317 nucleotides
mRNA_1935: 10303 - K00654 SPT serine palmitoyltransferase, at 548,678 to 550,878
10303
mRNA_1936: 10304 - K07424 CYP3A cytochrome P450, family 3, subfamily A, at 551,220 to 553,834
10304
mRNA_1937: 10305 - K18342 OTUD6 OTU domain-containing protein 6, at 554,394 to 556,031
10305
mRNA_1938: 10306 - HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 556,583 to 558,262
10306
mRNA_1939: 10307 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 558,580 to 560,603
10307
Group
Condition
mRNA
_1935
mRNA
_1936
mRNA
_1937
mRNA
_1938
mRNA
_1939
10303
10304
10305
10306
10307
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
-2.5
-0.3
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.6
-2.0
-0.1
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.0
-2.2
-0.4
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.3
-1.2
-0.1
-0.3
auxotrophy
Dropout Complete
N.D.
-0.4
-0.8
-0.2
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
-0.0
-1.0
-0.2
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.0
-1.8
+0.6
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.5
-1.3
-0.0
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
-1.9
+0.6
+0.1
growth on ypd
YPD
N.D.
-0.3
-0.3
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
-0.9
+0.3
-0.2
growth on oleic acid
YNB Glucose
N.D.
+0.1
-0.7
+0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
+0.0
-0.1
-0.4
auxotrophy
YNB Glucose
N.D.
+0.1
-0.9
+0.2
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
-0.9
+0.7
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
-0.2
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
-0.3
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
-0.2
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.4
+0.3
-0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
+0.4
+0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+1.0
+0.7
-0.3
-0.2
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