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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10305 and 10306 are separated by 551 nucleotides
10306 and 10307 are separated by 317 nucleotides
10307 and 10308 are separated by 560 nucleotides
10308 and 10309 are separated by 429 nucleotides
mRNA_1937: 10305 - K18342 OTUD6 OTU domain-containing protein 6, at 554,394 to 556,031
10305
mRNA_1938: 10306 - HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 556,583 to 558,262
10306
mRNA_1939: 10307 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 558,580 to 560,603
10307
mRNA_1940: 10308 - K00276 AOC3, AOC2, tynA primary-amine oxidase, at 561,164 to 563,777
10308
mRNA_1941: 10309 - KOG3798 Predicted Zn-dependent hydrolase (beta-lactamase superfamily), at 564,207 to 567,007
10309
Group
Condition
mRNA
_1937
mRNA
_1938
mRNA
_1939
mRNA
_1940
mRNA
_1941
10305
10306
10307
10308
10309
facs on lipid accumulation
Sorted No BODIPY Gate
-2.2
-0.4
+0.4
-0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-2.5
-0.3
+0.3
-0.1
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.0
-0.1
+0.4
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.2
-0.1
-0.3
-0.5
+0.5
growth on oleic acid
YNB Oleic Acid
-1.0
-0.2
-0.0
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.3
-0.0
-0.2
-0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.9
+0.6
+0.1
+0.3
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.8
+0.6
-0.1
+0.3
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.9
+0.3
-0.2
+0.1
-0.5
growth on oleic acid
YNB Glucose
-0.7
+0.2
-0.1
-0.0
-0.3
growth on ypd
YPD
-0.3
-0.1
-0.3
-0.2
-0.1
auxotrophy
Dropout Complete
-0.8
-0.2
+0.0
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.0
-0.2
-0.1
-0.7
auxotrophy
YNB Glucose
-0.9
+0.2
+0.1
+0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.2
-0.1
-0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
-0.4
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.2
-0.1
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.1
-0.1
-0.1
+0.4
growth on ricinoleic acid
YNB Glucose
-0.9
+0.7
-0.1
+0.3
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
-0.3
-0.2
+0.5
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.1
+0.1
-0.2
+0.4
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