Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
10306 and 10307 are separated by 317 nucleotides
10307 and 10308 are separated by 560 nucleotides
10308 and 10309 are separated by 429 nucleotides
10309 and 10310 are separated by 432 nucleotides
mRNA_1938: 10306 - HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 556,583 to 558,262
10306
mRNA_1939: 10307 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 558,580 to 560,603
10307
mRNA_1940: 10308 - K00276 AOC3, AOC2, tynA primary-amine oxidase, at 561,164 to 563,777
10308
mRNA_1941: 10309 - KOG3798 Predicted Zn-dependent hydrolase (beta-lactamase superfamily), at 564,207 to 567,007
10309
mRNA_1942: 10310 - HMMPfam-PLD-like domain-PF13091,ProSiteProfiles-Phospholipase D phosphodiesterase active site profile.-PS50035,SMART-Phospholipase D. Active site motifs.-SM00155,SUPERFAMILY--SSF56024, at 567,440 to 570,897
10310
Group
Condition
mRNA
_1938
mRNA
_1939
mRNA
_1940
mRNA
_1941
mRNA
_1942
10306
10307
10308
10309
10310
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.2
+0.5
-0.2
-1.0
growth on ypd
YPD
-0.1
-0.3
-0.2
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.3
-0.5
+0.5
-0.6
growth on oleic acid
YNB Oleic Acid
-0.2
-0.0
-0.0
-0.2
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.4
-0.1
-0.3
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.4
+0.0
-0.1
-0.8
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.2
+0.1
-0.5
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.2
-0.1
-0.7
+0.7
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.4
+0.1
+0.3
-0.2
growth on oleic acid
YNB Glucose
+0.2
-0.1
-0.0
-0.3
+0.1
auxotrophy
Dropout Complete
-0.2
+0.0
+0.1
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.1
+0.1
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.2
-0.1
+0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
-0.2
+0.0
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
-0.1
+0.3
-0.3
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
+0.1
+0.3
-0.4
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.3
-0.1
+0.5
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
-0.1
+0.4
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
-0.2
+0.4
-0.0
auxotrophy
YNB Glucose
+0.2
+0.1
+0.0
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.7
-0.1
+0.3
+0.4
-0.3
remove
mRNA_1938
plot
remove
mRNA_1939
plot
remove
mRNA_1940
remove
mRNA_1941
plot
remove
mRNA_1942
plot