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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10307 and 10308 are separated by 560 nucleotides
10308 and 10309 are separated by 429 nucleotides
10309 and 10310 are separated by 432 nucleotides
10310 and 10311 are separated by 240 nucleotides
mRNA_1939: 10307 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 558,580 to 560,603
10307
mRNA_1940: 10308 - K00276 AOC3, AOC2, tynA primary-amine oxidase, at 561,164 to 563,777
10308
mRNA_1941: 10309 - KOG3798 Predicted Zn-dependent hydrolase (beta-lactamase superfamily), at 564,207 to 567,007
10309
mRNA_1942: 10310 - HMMPfam-PLD-like domain-PF13091,ProSiteProfiles-Phospholipase D phosphodiesterase active site profile.-PS50035,SMART-Phospholipase D. Active site motifs.-SM00155,SUPERFAMILY--SSF56024, at 567,440 to 570,897
10310
mRNA_1943: 10311 - Hypothetical Protein, at 571,138 to 572,203
10311
Group
Condition
mRNA
_1939
mRNA
_1940
mRNA
_1941
mRNA
_1942
mRNA
_1943
10307
10308
10309
10310
10311
growth on ypd
YPD
-0.3
-0.2
-0.1
-0.5
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
-0.5
-0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.3
-0.3
-0.6
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.5
+0.5
-0.6
-0.0
growth on oleic acid
YNB Oleic Acid
-0.0
-0.0
-0.2
-0.5
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.3
-0.4
-0.6
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
-0.2
-0.3
-0.3
growth on oleic acid
YNB Glucose
-0.1
-0.0
-0.3
+0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.0
-0.1
-0.8
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.5
-0.2
-1.0
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
+0.2
-0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.1
-0.3
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.1
-0.7
+0.7
+0.1
auxotrophy
Dropout Complete
+0.0
+0.1
-0.1
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.3
+0.4
-0.3
-0.4
auxotrophy
YNB Glucose
+0.1
+0.0
+0.1
+0.1
-0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.2
+0.0
-0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.1
+0.3
-0.2
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.1
+0.5
-0.4
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
+0.4
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
+0.4
-0.0
+0.2
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