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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10311 and 10312 are separated by 390 nucleotides
10312 and 10313 are separated by 583 nucleotides
10313 and 10314 overlap by 25 nucleotides
10314 and 10315 are separated by 264 nucleotides
mRNA_1943: 10311 - Hypothetical Protein, at 571,138 to 572,203
10311
mRNA_1944: 10312 - BLAST Respiratory supercomplex factor 2, mitochondrial [Cla..., at 572,594 to 573,767
10312
mRNA_1945: 10313 - Hypothetical Protein, at 574,351 to 575,148
10313
mRNA_1946: 10314 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 575,124 to 577,080
10314
mRNA_1947: 10315 - K14864 FTSJ1, TRM7 tRNA (cytidine32/guanosine34-2'-O)-methyltransferase, at 577,345 to 578,684
10315
Group
Condition
mRNA
_1943
mRNA
_1944
mRNA
_1945
mRNA
_1946
mRNA
_1947
10311
10312
10313
10314
10315
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.6
-3.0
-4.7
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
-1.2
-1.1
-1.6
-1.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.3
-1.2
-2.1
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.3
-1.3
-1.8
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.3
-0.5
-1.1
-0.5
growth on ypd
YPD
-0.2
-0.4
+0.2
+0.5
-0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.1
-0.3
-0.9
+0.1
auxotrophy
YNB Glucose
-0.5
-0.3
+0.3
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.1
+0.6
-0.2
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.4
-0.4
-0.7
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.2
+0.3
+0.3
+0.0
growth on ricinoleic acid
YNB Glucose
-0.4
-0.2
+0.8
+0.5
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.0
+0.4
+0.5
+0.3
auxotrophy
Dropout Complete
-0.1
-0.2
+0.5
+1.0
-0.1
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
+0.6
+0.7
-0.1
growth on oleic acid
YNB Glucose
-0.1
+0.3
+0.6
+1.0
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.2
+1.0
+0.4
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.1
+0.6
+0.7
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.5
+1.4
+1.8
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.2
+1.7
+0.9
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.2
+1.6
+1.2
+0.3
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