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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10312 and 10313 are separated by 583 nucleotides
10313 and 10314 overlap by 25 nucleotides
10314 and 10315 are separated by 264 nucleotides
10315 and 10316 are separated by 1724 nucleotides
mRNA_1944: 10312 - BLAST Respiratory supercomplex factor 2, mitochondrial [Cla..., at 572,594 to 573,767
10312
mRNA_1945: 10313 - Hypothetical Protein, at 574,351 to 575,148
10313
mRNA_1946: 10314 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 575,124 to 577,080
10314
mRNA_1947: 10315 - K14864 FTSJ1, TRM7 tRNA (cytidine32/guanosine34-2'-O)-methyltransferase, at 577,345 to 578,684
10315
mRNA_1948: 10316 - K08176 PHO84 MFS transporter, PHS family, inorganic phosphate transporter, at 580,409 to 582,858
10316
Group
Condition
mRNA
_1944
mRNA
_1945
mRNA
_1946
mRNA
_1947
mRNA
_1948
10312
10313
10314
10315
10316
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
-3.0
-4.7
+0.4
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-1.2
-1.1
-1.6
-1.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-1.2
-2.1
-0.5
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-1.3
-1.8
+0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.5
-1.1
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.3
-0.9
+0.1
+0.2
growth on ypd
YPD
-0.4
+0.2
+0.5
-0.8
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.4
-0.7
+0.4
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.6
-0.2
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.3
+0.3
+0.0
+0.1
auxotrophy
YNB Glucose
-0.3
+0.3
+0.4
+0.1
+0.2
growth on ricinoleic acid
YNB Glucose
-0.2
+0.8
+0.5
+0.0
-0.1
auxotrophy
Dropout Complete
-0.2
+0.5
+1.0
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+1.0
+0.4
+0.1
-0.0
growth on oleic acid
YNB Glucose
+0.3
+0.6
+1.0
-0.3
-0.0
growth on oleic acid
YNB Oleic Acid
+0.1
+0.6
+0.7
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.4
+0.5
+0.3
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.6
+0.7
+0.3
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+1.4
+1.8
-0.2
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+1.7
+0.9
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+1.6
+1.2
+0.3
-0.0
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