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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10315 and 10316 are separated by 1724 nucleotides
10316 and 10317 are separated by 491 nucleotides
10317 and 10318 are separated by 1235 nucleotides
10318 and 10319 are separated by 506 nucleotides
mRNA_1947: 10315 - K14864 FTSJ1, TRM7 tRNA (cytidine32/guanosine34-2'-O)-methyltransferase, at 577,345 to 578,684
10315
mRNA_1948: 10316 - K08176 PHO84 MFS transporter, PHS family, inorganic phosphate transporter, at 580,409 to 582,858
10316
mRNA_1949: 10317 - KOG0254 Predicted transporter (major facilitator superfamily), at 583,350 to 585,589
10317
mRNA_1950: 10318 - K03965 NDUFB9 NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 9, at 586,825 to 587,644
10318
mRNA_1951: 10319 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 588,151 to 591,426
10319
Group
Condition
mRNA
_1947
mRNA
_1948
mRNA
_1949
mRNA
_1950
mRNA
_1951
10315
10316
10317
10318
10319
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.0
-0.6
N.D.
-0.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.1
-0.0
N.D.
-0.8
growth on ypd
YPD
-0.8
+0.1
-0.1
N.D.
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.2
-0.4
N.D.
-0.5
growth on ricinoleic acid
YNB Glucose
+0.0
-0.1
-0.3
N.D.
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.0
+0.2
N.D.
-0.7
ypd buoyancy
40 hrs High Buoyancy
-0.5
-0.1
+0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
+0.1
-0.1
N.D.
-0.1
growth on oleic acid
YNB Glucose
-0.3
-0.0
+0.1
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-1.2
+0.2
+0.2
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
+0.1
N.D.
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.1
-0.0
N.D.
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.1
-0.4
N.D.
+0.1
auxotrophy
Dropout Complete
-0.1
-0.0
+0.2
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
+0.2
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
+0.2
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.0
-0.1
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.0
-0.0
N.D.
+0.3
auxotrophy
YNB Glucose
+0.1
+0.2
+0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.1
+0.4
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.4
+0.3
N.D.
+0.1
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