Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 10316 and 10317 are separated by 491 nucleotides10317 and 10318 are separated by 1235 nucleotides10318 and 10319 are separated by 506 nucleotides10319 and 10320 are separated by 377 nucleotides mRNA_1948: 10316 - K08176 PHO84 MFS transporter, PHS family, inorganic phosphate transporter, at 580,409 to 582,858 10316 mRNA_1949: 10317 - KOG0254 Predicted transporter (major facilitator superfamily), at 583,350 to 585,589 10317 mRNA_1950: 10318 - K03965 NDUFB9 NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 9, at 586,825 to 587,644 10318 mRNA_1951: 10319 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 588,151 to 591,426 10319 mRNA_1952: 10320 - K14564 NOP56 nucleolar protein 56, at 591,804 to 593,975 10320
Group Condition mRNA_1948 mRNA_1949 mRNA_1950 mRNA_1951 mRNA_1952
10316 10317 10318 10319 10320
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.0 -0.6 N.D. -0.9 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate -0.2 -0.4 N.D. -0.5 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 -0.0 N.D. -0.8 N.D.
growth on ricinoleic acid YNB Glucose -0.1 -0.3 N.D. -0.4 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid +0.0 +0.2 N.D. -0.7 N.D.
growth on ypd YPD +0.1 -0.1 N.D. -0.4 N.D.
facs on lipid accumulation Sorted High BODIPY Gate +0.1 -0.0 N.D. -0.3 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.2 +0.1 N.D. -0.5 N.D.
ypd buoyancy 40 hrs High Buoyancy -0.1 +0.1 N.D. -0.1 N.D.
facs on lipid accumulation Sorted No BODIPY Gate +0.1 -0.4 N.D. +0.1 N.D.
growth on oleic acid YNB Glucose -0.0 +0.1 N.D. -0.1 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.1 -0.1 N.D. -0.1 N.D.
ypd buoyancy 40 hrs Median Buoyancy -0.0 -0.1 N.D. +0.2 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 +0.2 N.D. +0.0 N.D.
ypd buoyancy 40 hrs Low Buoyancy -0.0 -0.0 N.D. +0.3 N.D.
auxotrophy Dropout Complete -0.0 +0.2 N.D. +0.1 N.D.
auxotrophy YNB Glucose +0.2 +0.1 N.D. +0.1 N.D.
growth on oleic acid YNB Oleic Acid +0.1 +0.2 N.D. +0.1 N.D.
auxotrophy YNB Glucose 75mM Methionine +0.1 +0.4 N.D. +0.2 N.D.
auxotrophy YNB Glucose 75mM Arginine +0.4 +0.3 N.D. +0.1 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation +0.2 +0.2 N.D. +0.5 N.D.
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