Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 10317 and 10318 are separated by 1235 nucleotides10318 and 10319 are separated by 506 nucleotides10319 and 10320 are separated by 377 nucleotides10320 and 10321 are separated by 507 nucleotides mRNA_1949: 10317 - KOG0254 Predicted transporter (major facilitator superfamily), at 583,350 to 585,589 10317 mRNA_1950: 10318 - K03965 NDUFB9 NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 9, at 586,825 to 587,644 10318 mRNA_1951: 10319 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 588,151 to 591,426 10319 mRNA_1952: 10320 - K14564 NOP56 nucleolar protein 56, at 591,804 to 593,975 10320 mRNA_1953: 10321 - K18442 ARFGEF, BIG brefeldin A-inhibited guanine nucleotide-exchange protein, at 594,483 to 601,309 10321
Group Condition mRNA_1949 mRNA_1950 mRNA_1951 mRNA_1952 mRNA_1953
10317 10318 10319 10320 10321
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.6 N.D. -0.9 N.D. N.D.
facs on lipid accumulation Sorted Low BODIPY Gate -0.4 N.D. -0.5 N.D. N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.0 N.D. -0.8 N.D. N.D.
growth on ricinoleic acid YNB Glucose -0.3 N.D. -0.4 N.D. N.D.
growth on ricinoleic acid YNB Ricinoleic Acid +0.2 N.D. -0.7 N.D. N.D.
growth on ypd YPD -0.1 N.D. -0.4 N.D. N.D.
facs on lipid accumulation Sorted High BODIPY Gate -0.0 N.D. -0.3 N.D. N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.1 N.D. -0.5 N.D. N.D.
facs on lipid accumulation Sorted No BODIPY Gate -0.4 N.D. +0.1 N.D. N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.1 N.D. -0.1 N.D. N.D.
growth on oleic acid YNB Glucose +0.1 N.D. -0.1 N.D. N.D.
ypd buoyancy 40 hrs High Buoyancy +0.1 N.D. -0.1 N.D. N.D.
ypd buoyancy 40 hrs Median Buoyancy -0.1 N.D. +0.2 N.D. N.D.
auxotrophy YNB Glucose +0.1 N.D. +0.1 N.D. N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid +0.2 N.D. +0.0 N.D. N.D.
ypd buoyancy 40 hrs Low Buoyancy -0.0 N.D. +0.3 N.D. N.D.
growth on oleic acid YNB Oleic Acid +0.2 N.D. +0.1 N.D. N.D.
auxotrophy Dropout Complete +0.2 N.D. +0.1 N.D. N.D.
auxotrophy YNB Glucose 75mM Arginine +0.3 N.D. +0.1 N.D. N.D.
auxotrophy YNB Glucose 75mM Methionine +0.4 N.D. +0.2 N.D. N.D.
ypd buoyancy 40 hrs No Buoyancy Separation +0.2 N.D. +0.5 N.D. N.D.
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