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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10321 and 10322 are separated by 115 nucleotides
10322 and 10323 are separated by 998 nucleotides
10323 and 10324 are separated by 1153 nucleotides
10324 and 10325 are separated by 366 nucleotides
mRNA_1953: 10321 - K18442 ARFGEF, BIG brefeldin A-inhibited guanine nucleotide-exchange protein, at 594,483 to 601,309
10321
mRNA_1954: 10322 - Hypothetical Protein, at 601,425 to 602,462
10322
mRNA_1955: 10323 - KOG0379 Kelch repeat-containing proteins, at 603,461 to 605,817
10323
mRNA_1956: 10324 - BLAST 40S ribosomal protein S1 [Exophiala sideris], at 606,971 to 607,614
10324
mRNA_1957: 10325 - K02984 RP-S3Ae, RPS3A small subunit ribosomal protein S3Ae, at 607,981 to 609,583
10325
Group
Condition
mRNA
_1953
mRNA
_1954
mRNA
_1955
mRNA
_1956
mRNA
_1957
10321
10322
10323
10324
10325
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.1
-0.5
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.3
+0.1
-1.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
-0.5
+0.3
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
-0.2
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.8
+0.5
N.D.
growth on oleic acid
YNB Glucose
N.D.
-0.1
-0.1
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
+0.1
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
+0.3
-0.3
N.D.
auxotrophy
Dropout Complete
N.D.
+0.1
-0.1
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
-0.1
-0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.3
+0.0
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
-0.0
+0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
+0.3
-0.4
N.D.
auxotrophy
YNB Glucose
N.D.
-0.0
+0.2
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
+0.2
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
-0.1
+0.0
N.D.
growth on ypd
YPD
N.D.
+0.5
+0.3
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
+0.0
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.0
+0.2
+0.4
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
+0.2
+0.6
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
+0.2
+0.4
N.D.
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