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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10322 and 10323 are separated by 998 nucleotides
10323 and 10324 are separated by 1153 nucleotides
10324 and 10325 are separated by 366 nucleotides
10325 and 10326 are separated by 722 nucleotides
mRNA_1954: 10322 - Hypothetical Protein, at 601,425 to 602,462
10322
mRNA_1955: 10323 - KOG0379 Kelch repeat-containing proteins, at 603,461 to 605,817
10323
mRNA_1956: 10324 - BLAST 40S ribosomal protein S1 [Exophiala sideris], at 606,971 to 607,614
10324
mRNA_1957: 10325 - K02984 RP-S3Ae, RPS3A small subunit ribosomal protein S3Ae, at 607,981 to 609,583
10325
mRNA_1958: 10326 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 610,306 to 612,524
10326
Group
Condition
mRNA
_1954
mRNA
_1955
mRNA
_1956
mRNA
_1957
mRNA
_1958
10322
10323
10324
10325
10326
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.1
-1.0
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
-0.2
-0.2
-0.0
N.D.
-0.3
growth on oleic acid
YNB Glucose
-0.1
-0.1
-0.1
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.8
+0.5
N.D.
-0.2
auxotrophy
Dropout Complete
+0.1
-0.1
-0.1
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
-0.2
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
-0.5
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.5
+0.3
N.D.
+0.1
auxotrophy
YNB Glucose
-0.0
+0.2
-0.1
N.D.
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.3
-0.3
N.D.
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.0
-0.3
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
-0.0
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.2
+0.1
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.3
-0.4
N.D.
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
+0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.0
+0.2
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.2
+0.4
N.D.
-0.2
growth on ypd
YPD
+0.5
+0.3
-0.5
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.2
+0.4
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.0
+0.2
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
-0.2
+0.2
+0.6
N.D.
-0.0
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