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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10332 and 10333 are separated by 563 nucleotides
10333 and 10334 are separated by 1207 nucleotides
10334 and 10335 are separated by 303 nucleotides
10335 and 10336 are separated by 391 nucleotides
mRNA_1964: 10332 - K01495 GCH1, folE GTP cyclohydrolase I, at 621,166 to 622,157
10332
mRNA_1965: 10333 - K11422 SETD1, SET1 histone-lysine N-methyltransferase SETD1, at 622,721 to 626,978
10333
mRNA_1966: 10334 - K09522 DNAJC2 DnaJ homolog subfamily C member 2, at 628,186 to 629,960
10334
mRNA_1967: 10335 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 630,264 to 633,467
10335
mRNA_1968: 10336 - HMMPfam-Membrane bound O-acyl transferase family-PF13813, at 633,859 to 635,339
10336
Group
Condition
mRNA
_1964
mRNA
_1965
mRNA
_1966
mRNA
_1967
mRNA
_1968
10332
10333
10334
10335
10336
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-3.1
N.D.
-0.4
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-2.0
N.D.
-0.1
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-1.7
N.D.
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-1.6
N.D.
-0.0
+0.5
growth on ypd
YPD
N.D.
-1.0
N.D.
+0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.6
N.D.
+0.1
+0.2
growth on oleic acid
YNB Glucose
N.D.
+0.4
N.D.
-0.2
-0.4
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
N.D.
-0.1
-0.3
auxotrophy
Dropout Complete
N.D.
+0.0
N.D.
-0.2
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
N.D.
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
N.D.
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.6
N.D.
-0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.3
N.D.
+0.2
-0.2
auxotrophy
YNB Glucose
N.D.
+0.2
N.D.
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
N.D.
+0.2
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.3
N.D.
+0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.3
N.D.
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+1.4
N.D.
+0.0
-0.6
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.5
N.D.
+0.1
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+1.1
N.D.
+0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+1.4
N.D.
+0.2
+0.4
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