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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10333 and 10334 are separated by 1207 nucleotides
10334 and 10335 are separated by 303 nucleotides
10335 and 10336 are separated by 391 nucleotides
10336 and 10337 are separated by 298 nucleotides
mRNA_1965: 10333 - K11422 SETD1, SET1 histone-lysine N-methyltransferase SETD1, at 622,721 to 626,978
10333
mRNA_1966: 10334 - K09522 DNAJC2 DnaJ homolog subfamily C member 2, at 628,186 to 629,960
10334
mRNA_1967: 10335 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 630,264 to 633,467
10335
mRNA_1968: 10336 - HMMPfam-Membrane bound O-acyl transferase family-PF13813, at 633,859 to 635,339
10336
mRNA_1969: 10337 - K14961 RBBP5, SWD1, CPS50 COMPASS component SWD1, at 635,638 to 637,721
10337
Group
Condition
mRNA
_1965
mRNA
_1966
mRNA
_1967
mRNA
_1968
mRNA
_1969
10333
10334
10335
10336
10337
facs on lipid accumulation
Sorted Low BODIPY Gate
-3.1
N.D.
-0.4
-0.6
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.6
N.D.
-0.0
+0.5
-1.2
facs on lipid accumulation
Sorted No BODIPY Gate
-1.7
N.D.
-0.2
+0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-2.0
N.D.
-0.1
+0.4
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
N.D.
+0.2
-0.0
-1.9
growth on ypd
YPD
-1.0
N.D.
+0.2
+0.2
-0.3
growth on ricinoleic acid
YNB Glucose
+0.2
N.D.
-0.1
-0.3
-0.2
growth on oleic acid
YNB Glucose
+0.4
N.D.
-0.2
-0.4
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.6
N.D.
+0.1
+0.2
+0.9
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
+0.2
-0.2
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
N.D.
-0.1
-0.3
+0.8
growth on oleic acid
YNB Oleic Acid
+0.3
N.D.
-0.1
-0.1
+0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
+0.2
+0.3
+0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.3
N.D.
+0.1
+0.3
+0.7
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
-0.1
+0.1
+1.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.1
N.D.
+0.1
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.4
N.D.
+0.0
-0.6
+0.9
auxotrophy
Dropout Complete
+0.0
N.D.
-0.2
+0.0
+2.0
auxotrophy
YNB Glucose
+0.2
N.D.
-0.1
+0.2
+1.6
auxotrophy
YNB Glucose 75mM Methionine
+0.5
N.D.
+0.1
+0.3
+1.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.4
N.D.
+0.2
+0.4
+0.9
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