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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10335 and 10336 are separated by 391 nucleotides
10336 and 10337 are separated by 298 nucleotides
10337 and 10338 are separated by 365 nucleotides
10338 and 10339 are separated by 2423 nucleotides
mRNA_1967: 10335 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 630,264 to 633,467
10335
mRNA_1968: 10336 - HMMPfam-Membrane bound O-acyl transferase family-PF13813, at 633,859 to 635,339
10336
mRNA_1969: 10337 - K14961 RBBP5, SWD1, CPS50 COMPASS component SWD1, at 635,638 to 637,721
10337
mRNA_1970: 10338 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 638,087 to 640,268
10338
mRNA_1971: 10339 - K02429 fucP MFS transporter, FHS family, L-fucose permease, at 642,692 to 644,646
10339
Group
Condition
mRNA
_1967
mRNA
_1968
mRNA
_1969
mRNA
_1970
mRNA
_1971
10335
10336
10337
10338
10339
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.0
-1.9
-0.8
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.6
-0.5
+0.0
-0.5
growth on oleic acid
YNB Glucose
-0.2
-0.4
+0.3
-0.2
-0.3
growth on ricinoleic acid
YNB Glucose
-0.1
-0.3
-0.2
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.5
-1.2
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.3
+0.8
-0.2
-0.4
growth on ypd
YPD
+0.2
+0.2
-0.3
-0.1
+0.3
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
+0.9
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.2
+0.3
+0.4
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.6
+0.9
+0.0
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
+0.4
+0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.2
-0.1
+0.4
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.4
+0.2
-0.0
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.3
+0.7
+0.0
+0.1
auxotrophy
YNB Glucose
-0.1
+0.2
+1.6
+0.0
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.4
+0.9
+0.5
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.2
+0.9
+0.2
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
+1.4
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.3
+0.6
+0.2
+0.5
auxotrophy
Dropout Complete
-0.2
+0.0
+2.0
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.3
+1.6
+0.5
-0.0
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