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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10337 and 10338 are separated by 365 nucleotides
10338 and 10339 are separated by 2423 nucleotides
10339 and 10340 are separated by 539 nucleotides
10340 and 10341 are separated by 370 nucleotides
mRNA_1969: 10337 - K14961 RBBP5, SWD1, CPS50 COMPASS component SWD1, at 635,638 to 637,721
10337
mRNA_1970: 10338 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 638,087 to 640,268
10338
mRNA_1971: 10339 - K02429 fucP MFS transporter, FHS family, L-fucose permease, at 642,692 to 644,646
10339
mRNA_1972: 10340 - K20301 TRAPPC2, TRS20 trafficking protein particle complex subunit 2, at 645,186 to 645,812
10340
mRNA_1973: 10341 - KOG1057 Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton, at 646,183 to 650,027
10341
Group
Condition
mRNA
_1969
mRNA
_1970
mRNA
_1971
mRNA
_1972
mRNA
_1973
10337
10338
10339
10340
10341
ypd buoyancy
40 hrs No Buoyancy Separation
-1.9
-0.8
-0.5
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
-0.2
+0.2
-0.2
N.D.
-0.6
growth on oleic acid
YNB Glucose
+0.3
-0.2
-0.3
N.D.
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
+0.0
-0.5
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.2
+0.2
+0.3
N.D.
+0.2
growth on ypd
YPD
-0.3
-0.1
+0.3
N.D.
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.4
-0.5
N.D.
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.9
+0.5
-0.4
N.D.
-1.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.8
-0.2
-0.4
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
+0.9
-0.1
-0.1
N.D.
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.1
+0.2
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.4
+0.5
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.7
+0.0
+0.1
N.D.
+0.2
auxotrophy
YNB Glucose
+1.6
+0.0
-0.6
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.0
+0.4
N.D.
+0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+0.2
+0.5
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.9
+0.0
+0.2
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.9
+0.2
+0.4
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+1.4
+0.2
+0.1
N.D.
+0.3
auxotrophy
Dropout Complete
+2.0
+0.2
-0.3
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+1.6
+0.5
-0.0
N.D.
+0.2
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