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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10338 and 10339 are separated by 2423 nucleotides
10339 and 10340 are separated by 539 nucleotides
10340 and 10341 are separated by 370 nucleotides
10341 and 10342 are separated by 226 nucleotides
mRNA_1970: 10338 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 638,087 to 640,268
10338
mRNA_1971: 10339 - K02429 fucP MFS transporter, FHS family, L-fucose permease, at 642,692 to 644,646
10339
mRNA_1972: 10340 - K20301 TRAPPC2, TRS20 trafficking protein particle complex subunit 2, at 645,186 to 645,812
10340
mRNA_1973: 10341 - KOG1057 Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton, at 646,183 to 650,027
10341
mRNA_1974: 10342 - KOG4067 Uncharacterized conserved protein, at 650,254 to 651,223
10342
Group
Condition
mRNA
_1970
mRNA
_1971
mRNA
_1972
mRNA
_1973
mRNA
_1974
10338
10339
10340
10341
10342
growth on ricinoleic acid
YNB Glucose
+0.2
-0.2
N.D.
-0.6
-0.7
growth on oleic acid
YNB Glucose
-0.2
-0.3
N.D.
-0.6
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
-0.5
N.D.
-0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.4
N.D.
-1.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.5
N.D.
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.4
N.D.
+0.3
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
N.D.
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.2
N.D.
+0.2
-0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.5
N.D.
-0.1
-0.6
auxotrophy
YNB Glucose
+0.0
-0.6
N.D.
+0.2
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.5
N.D.
+0.4
+0.3
growth on ypd
YPD
-0.1
+0.3
N.D.
-0.3
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.4
N.D.
+0.7
-0.8
auxotrophy
Dropout Complete
+0.2
-0.3
N.D.
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.3
N.D.
+0.2
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
N.D.
+0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
N.D.
+0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.4
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
N.D.
+0.3
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.0
N.D.
+0.2
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.5
N.D.
+0.1
+0.2
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