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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10341 and 10342 are separated by 226 nucleotides
10342 and 10343 are separated by 361 nucleotides
10343 and 10344 are separated by 405 nucleotides
10344 and 10345 are separated by 173 nucleotides
mRNA_1973: 10341 - KOG1057 Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton, at 646,183 to 650,027
10341
mRNA_1974: 10342 - KOG4067 Uncharacterized conserved protein, at 650,254 to 651,223
10342
mRNA_1975: 10343 - K12350 SMPD1, ASM sphingomyelin phosphodiesterase, at 651,585 to 654,888
10343
mRNA_1976: 10344 - Hypothetical Protein, at 655,294 to 656,131
10344
mRNA_1977: 10345 - HMMPfam-Eukaryotic initiation factor 4E-PF01652,SUPERFAMILY--SSF55418, at 656,305 to 657,635
10345
Group
Condition
mRNA
_1973
mRNA
_1974
mRNA
_1975
mRNA
_1976
mRNA
_1977
10341
10342
10343
10344
10345
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.3
-0.4
-2.6
N.D.
growth on oleic acid
YNB Glucose
-0.6
-0.3
+0.0
-0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.2
-0.3
-1.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.2
-0.2
-0.9
N.D.
growth on ypd
YPD
-0.3
+0.4
+0.2
-0.8
N.D.
growth on ricinoleic acid
YNB Glucose
-0.6
-0.7
-0.0
+0.7
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.1
-0.2
+0.5
+0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
-0.1
-0.4
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.2
-0.3
-0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
-0.6
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.7
-0.8
-0.0
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
+0.1
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.7
-0.3
+0.9
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.2
+0.3
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.2
-0.5
+0.7
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.6
+0.0
+1.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.3
-0.3
+0.9
N.D.
auxotrophy
Dropout Complete
+0.2
+0.2
-0.1
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.4
+0.1
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.4
+0.1
-0.0
N.D.
auxotrophy
YNB Glucose
+0.2
+0.5
+0.2
+0.4
N.D.
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