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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10342 and 10343 are separated by 361 nucleotides
10343 and 10344 are separated by 405 nucleotides
10344 and 10345 are separated by 173 nucleotides
10345 and 10346 are separated by 211 nucleotides
mRNA_1974: 10342 - KOG4067 Uncharacterized conserved protein, at 650,254 to 651,223
10342
mRNA_1975: 10343 - K12350 SMPD1, ASM sphingomyelin phosphodiesterase, at 651,585 to 654,888
10343
mRNA_1976: 10344 - Hypothetical Protein, at 655,294 to 656,131
10344
mRNA_1977: 10345 - HMMPfam-Eukaryotic initiation factor 4E-PF01652,SUPERFAMILY--SSF55418, at 656,305 to 657,635
10345
mRNA_1978: 10346 - K14409 SMG7, EST1C protein SMG7, at 657,847 to 661,571
10346
Group
Condition
mRNA
_1974
mRNA
_1975
mRNA
_1976
mRNA
_1977
mRNA
_1978
10342
10343
10344
10345
10346
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.4
-2.6
N.D.
+1.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.2
-0.9
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.3
+0.9
N.D.
-1.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
-0.0
+0.0
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.3
-1.1
N.D.
+0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.3
-0.3
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.6
+0.1
N.D.
+0.0
growth on oleic acid
YNB Glucose
-0.3
+0.0
-0.4
N.D.
+0.3
growth on ypd
YPD
+0.4
+0.2
-0.8
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
-0.4
N.D.
+0.5
growth on ricinoleic acid
YNB Glucose
-0.7
-0.0
+0.7
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
-0.3
+0.9
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.5
+0.7
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
-0.0
N.D.
+0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.3
+0.2
N.D.
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.1
-0.1
N.D.
+0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.5
+0.3
N.D.
+0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.1
-0.0
N.D.
+0.6
auxotrophy
Dropout Complete
+0.2
-0.1
+0.1
N.D.
+1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
+0.0
+1.1
N.D.
+0.8
auxotrophy
YNB Glucose
+0.5
+0.2
+0.4
N.D.
+0.6
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