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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10346 and 10347 are separated by 406 nucleotides
10347 and 10348 are separated by 400 nucleotides
10348 and 10349 are separated by 791 nucleotides
10349 and 10350 are separated by 367 nucleotides
mRNA_1978: 10346 - K14409 SMG7, EST1C protein SMG7, at 657,847 to 661,571
10346
mRNA_1979: 10347 - KOG2362 Uncharacterized Fe-S protein, at 661,978 to 663,393
10347
mRNA_1980: 10348 - KOG3436 60S ribosomal protein L35, at 663,794 to 664,282
10348
mRNA_1981: 10349 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 665,074 to 666,880
10349
mRNA_1982: 10350 - HMMPfam-Copper binding proteins, plastocyanin/azurin family-PF00127,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF49503, at 667,248 to 669,066
10350
Group
Condition
mRNA
_1978
mRNA
_1979
mRNA
_1980
mRNA
_1981
mRNA
_1982
10346
10347
10348
10349
10350
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.0
-0.1
N.D.
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.1
N.D.
-0.4
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.2
N.D.
+0.1
-0.2
growth on ypd
YPD
+0.0
-0.3
N.D.
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.0
N.D.
-0.4
-0.1
growth on ricinoleic acid
YNB Glucose
+0.2
-0.1
N.D.
-0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
N.D.
+0.2
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
-0.2
N.D.
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.1
N.D.
-0.2
+0.3
growth on oleic acid
YNB Glucose
+0.3
-0.2
N.D.
+0.2
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
+0.2
N.D.
-0.1
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.1
N.D.
+0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.3
N.D.
+0.3
+0.4
auxotrophy
Dropout Complete
+1.0
-0.2
N.D.
-0.9
+1.0
auxotrophy
YNB Glucose 75mM Arginine
+0.7
-0.1
N.D.
-0.6
+0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.8
-0.1
N.D.
-0.1
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.6
-0.1
N.D.
-0.3
+1.0
auxotrophy
YNB Glucose
+0.6
-0.1
N.D.
-0.4
+1.2
growth on oleic acid
YNB Oleic Acid
+0.7
-0.0
N.D.
+0.3
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+0.1
N.D.
+0.8
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.0
+0.3
N.D.
+0.1
+0.2
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