Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 10346 and 10347 are separated by 406 nucleotides10347 and 10348 are separated by 400 nucleotides10348 and 10349 are separated by 791 nucleotides10349 and 10350 are separated by 367 nucleotides mRNA_1978: 10346 - K14409 SMG7, EST1C protein SMG7, at 657,847 to 661,571 10346 mRNA_1979: 10347 - KOG2362 Uncharacterized Fe-S protein, at 661,978 to 663,393 10347 mRNA_1980: 10348 - KOG3436 60S ribosomal protein L35, at 663,794 to 664,282 10348 mRNA_1981: 10349 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 665,074 to 666,880 10349 mRNA_1982: 10350 - HMMPfam-Copper binding proteins, plastocyanin/azurin family-PF00127,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF49503, at 667,248 to 669,066 10350
Group Condition mRNA_1978 mRNA_1979 mRNA_1980 mRNA_1981 mRNA_1982
10346 10347 10348 10349 10350
buoyancy on lipid accumulation 40 hrs Low Buoyancy -1.0 -0.1 N.D. +0.1 -0.1
facs on lipid accumulation Sorted High BODIPY Gate +0.0 +0.1 N.D. -0.4 -0.3
ypd buoyancy 40 hrs High Buoyancy +0.0 -0.2 N.D. +0.1 -0.2
growth on ypd YPD +0.0 -0.3 N.D. +0.1 -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.3 -0.0 N.D. -0.4 -0.1
growth on ricinoleic acid YNB Glucose +0.2 -0.1 N.D. -0.1 +0.0
ypd buoyancy 40 hrs Median Buoyancy -0.1 +0.1 N.D. +0.2 -0.2
growth on ricinoleic acid YNB Methylricinoleic Acid +0.6 -0.2 N.D. -0.1 +0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.4 -0.1 N.D. -0.2 +0.3
growth on oleic acid YNB Glucose +0.3 -0.2 N.D. +0.2 +0.3
facs on lipid accumulation Sorted No BODIPY Gate +0.6 +0.2 N.D. -0.1 -0.0
growth on ricinoleic acid YNB Ricinoleic Acid +0.5 -0.1 N.D. +0.1 +0.3
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 +0.3 N.D. +0.3 +0.4
auxotrophy Dropout Complete +1.0 -0.2 N.D. -0.9 +1.0
auxotrophy YNB Glucose 75mM Arginine +0.7 -0.1 N.D. -0.6 +0.9
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.8 -0.1 N.D. -0.1 +0.4
auxotrophy YNB Glucose 75mM Methionine +0.6 -0.1 N.D. -0.3 +1.0
auxotrophy YNB Glucose +0.6 -0.1 N.D. -0.4 +1.2
growth on oleic acid YNB Oleic Acid +0.7 -0.0 N.D. +0.3 +0.4
ypd buoyancy 40 hrs Low Buoyancy +0.5 +0.1 N.D. +0.8 +0.1
facs on lipid accumulation Sorted Low BODIPY Gate +1.0 +0.3 N.D. +0.1 +0.2
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