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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10358 and 10359 are separated by 924 nucleotides
10359 and 10360 are separated by 385 nucleotides
10360 and 10361 are separated by 954 nucleotides
10361 and 10362 are separated by 523 nucleotides
mRNA_1990: 10358 - HMMPfam-PPR repeat-PF01535,HMMPfam-Pentatricopeptide repeat domain-PF13812,ProSiteProfiles-Pentatricopeptide (PPR) repeat profile.-PS51375,TIGRFAM-PPR pentatricopeptide repeat domain-TIGR00756, at 684,324 to 686,633
10358
mRNA_1991: 10359 - K03457 TC.NCS1 nucleobase-cation symporter-1, NCS1 family, at 687,558 to 690,393
10359
mRNA_1992: 10360 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 690,779 to 693,096
10360
mRNA_1993: 10361 - Hypothetical Protein, at 694,051 to 694,539
10361
mRNA_1994: 10362 - K03235 EF3, TEF3 elongation factor 3, at 695,063 to 698,759
10362
Group
Condition
mRNA
_1990
mRNA
_1991
mRNA
_1992
mRNA
_1993
mRNA
_1994
10358
10359
10360
10361
10362
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.6
-0.3
-1.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
-0.3
-0.8
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
-0.1
-0.5
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.1
-0.7
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.1
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.0
-0.4
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.4
+0.5
-0.3
N.D.
auxotrophy
YNB Glucose
N.D.
-0.1
+0.4
-0.3
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
+0.0
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
+0.3
+0.1
N.D.
growth on oleic acid
YNB Glucose
N.D.
+0.3
+0.0
-0.0
N.D.
auxotrophy
Dropout Complete
N.D.
-0.1
+0.2
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
-0.2
+0.6
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.5
+0.0
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.0
+0.6
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
-0.2
+0.7
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
+0.3
+0.7
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.0
+0.9
N.D.
growth on ypd
YPD
N.D.
+0.1
-0.1
+1.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.6
-0.0
+0.7
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
-0.1
+1.3
N.D.
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