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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10363 and 10364 are separated by 219 nucleotides
10364 and 10365 are separated by 600 nucleotides
10365 and 10366 are separated by 487 nucleotides
10366 and 10367 are separated by 451 nucleotides
mRNA_1995: 10363 - KOG0062 ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b, at 699,690 to 700,377
10363
mRNA_1996: 10364 - KOG0379 Kelch repeat-containing proteins, at 700,597 to 701,909
10364
mRNA_1997: 10365 - KOG0627 Heat shock transcription factor, at 702,510 to 703,691
10365
mRNA_1998: 10366 - K08869 ADCK, ABC1 aarF domain-containing kinase, at 704,179 to 706,336
10366
mRNA_1999: 10367 - Hypothetical Protein, at 706,788 to 707,404
10367
Group
Condition
mRNA
_1995
mRNA
_1996
mRNA
_1997
mRNA
_1998
mRNA
_1999
10363
10364
10365
10366
10367
auxotrophy
Dropout Complete
-0.1
-0.5
N.D.
-0.4
-2.0
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.6
N.D.
+0.2
-2.0
growth on oleic acid
YNB Oleic Acid
-0.5
-0.5
N.D.
-0.2
-0.8
growth on oleic acid
YNB Glucose
-0.6
-0.6
N.D.
-0.0
-0.7
auxotrophy
YNB Glucose
+0.0
-0.8
N.D.
+0.1
-1.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.5
N.D.
-0.3
-0.5
growth on ricinoleic acid
YNB Glucose
-0.3
-0.3
N.D.
+0.2
-1.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.0
N.D.
-0.4
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
N.D.
+0.1
-1.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
+0.0
N.D.
-0.2
-1.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.3
N.D.
-0.7
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
+0.1
N.D.
+0.0
-1.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
+0.1
N.D.
-0.0
-1.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.3
N.D.
-0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.8
+0.1
N.D.
-0.3
-1.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.2
N.D.
+0.2
-1.0
ypd buoyancy
40 hrs Median Buoyancy
-0.5
+0.3
N.D.
-0.0
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.0
N.D.
-0.8
+0.9
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.2
N.D.
+0.2
+0.3
growth on ypd
YPD
+0.1
-0.7
N.D.
+0.1
+0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.7
N.D.
+0.0
+0.3
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