Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 10368 and 10369 are separated by 113 nucleotides10369 and 10370 are separated by 1684 nucleotides10370 and 10371 are separated by 159 nucleotides10371 and 10372 are separated by 611 nucleotides mRNA_2000: 10368 - K09650 PARL, PSARL, PCP1 rhomboid-like protein, at 707,641 to 708,923 10368 mRNA_2001: 10369 - Hypothetical Protein, at 709,037 to 710,403 10369 mRNA_2002: 10370 - HMMPfam-NAD(P)-binding Rossmann-like domain-PF13450,SUPERFAMILY--SSF51971, at 712,088 to 714,509 10370 mRNA_2003: 10371 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 714,669 to 717,655 10371 mRNA_2004: 10372 - Hypothetical Protein, at 718,267 to 719,987 10372
Group Condition mRNA_2000 mRNA_2001 mRNA_2002 mRNA_2003 mRNA_2004
10368 10369 10370 10371 10372
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.3 -0.5 N.D. -2.0 -1.0
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 +0.5 N.D. -3.8 -0.1
ypd buoyancy 40 hrs No Buoyancy Separation -0.1 -1.2 N.D. -0.5 -0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 -0.4 N.D. -0.5 -0.5
ypd buoyancy 40 hrs High Buoyancy -0.2 -0.3 N.D. -0.8 +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.3 -0.7 N.D. +1.0 -0.7
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.0 -0.2 N.D. -0.1 -0.2
ypd buoyancy 40 hrs Median Buoyancy +0.2 -0.2 N.D. -0.2 +0.1
growth on ypd YPD +0.0 +0.2 N.D. -0.2 -0.0
facs on lipid accumulation Sorted No BODIPY Gate +0.4 +0.2 N.D. -0.3 -0.2
growth on ricinoleic acid YNB Glucose +0.0 -0.4 N.D. +1.0 -0.2
ypd buoyancy 40 hrs Low Buoyancy -0.1 -0.3 N.D. +0.6 +0.3
auxotrophy Dropout Complete -0.1 +0.2 N.D. +0.3 +0.2
auxotrophy YNB Glucose +0.0 -0.2 N.D. +0.7 +0.3
auxotrophy YNB Glucose 75mM Arginine +0.1 -0.1 N.D. +0.4 +0.5
growth on oleic acid YNB Oleic Acid +0.3 -0.0 N.D. +0.4 +0.2
growth on oleic acid YNB Glucose -0.1 +0.2 N.D. +0.5 +0.3
auxotrophy YNB Glucose 75mM Methionine +0.0 +0.2 N.D. +0.7 +0.4
growth on ricinoleic acid YNB Methylricinoleic Acid +0.2 +0.4 N.D. +1.6 -0.0
growth on ricinoleic acid YNB Ricinoleic Acid +0.2 +0.8 N.D. +1.5 -0.3
facs on lipid accumulation Sorted High BODIPY Gate +0.5 +0.2 N.D. +2.2 +0.3
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