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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10368 and 10369 are separated by 113 nucleotides
10369 and 10370 are separated by 1684 nucleotides
10370 and 10371 are separated by 159 nucleotides
10371 and 10372 are separated by 611 nucleotides
mRNA_2000: 10368 - K09650 PARL, PSARL, PCP1 rhomboid-like protein, at 707,641 to 708,923
10368
mRNA_2001: 10369 - Hypothetical Protein, at 709,037 to 710,403
10369
mRNA_2002: 10370 - HMMPfam-NAD(P)-binding Rossmann-like domain-PF13450,SUPERFAMILY--SSF51971, at 712,088 to 714,509
10370
mRNA_2003: 10371 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 714,669 to 717,655
10371
mRNA_2004: 10372 - Hypothetical Protein, at 718,267 to 719,987
10372
Group
Condition
mRNA
_2000
mRNA
_2001
mRNA
_2002
mRNA
_2003
mRNA
_2004
10368
10369
10370
10371
10372
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.5
N.D.
-2.0
-1.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.5
N.D.
-3.8
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-1.2
N.D.
-0.5
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.4
N.D.
-0.5
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.3
N.D.
-0.8
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.7
N.D.
+1.0
-0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.2
N.D.
-0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.2
N.D.
-0.2
+0.1
growth on ypd
YPD
+0.0
+0.2
N.D.
-0.2
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.2
N.D.
-0.3
-0.2
growth on ricinoleic acid
YNB Glucose
+0.0
-0.4
N.D.
+1.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.3
N.D.
+0.6
+0.3
auxotrophy
Dropout Complete
-0.1
+0.2
N.D.
+0.3
+0.2
auxotrophy
YNB Glucose
+0.0
-0.2
N.D.
+0.7
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
N.D.
+0.4
+0.5
growth on oleic acid
YNB Oleic Acid
+0.3
-0.0
N.D.
+0.4
+0.2
growth on oleic acid
YNB Glucose
-0.1
+0.2
N.D.
+0.5
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.2
N.D.
+0.7
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.4
N.D.
+1.6
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.8
N.D.
+1.5
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
+0.2
N.D.
+2.2
+0.3
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