Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 10369 and 10370 are separated by 1684 nucleotides10370 and 10371 are separated by 159 nucleotides10371 and 10372 are separated by 611 nucleotides10372 and 10373 are separated by 762 nucleotides mRNA_2001: 10369 - Hypothetical Protein, at 709,037 to 710,403 10369 mRNA_2002: 10370 - HMMPfam-NAD(P)-binding Rossmann-like domain-PF13450,SUPERFAMILY--SSF51971, at 712,088 to 714,509 10370 mRNA_2003: 10371 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 714,669 to 717,655 10371 mRNA_2004: 10372 - Hypothetical Protein, at 718,267 to 719,987 10372 mRNA_2005: 10373 - K08286 E2.7.11.- protein-serine/threonine kinase, at 720,750 to 723,688 10373
Group Condition mRNA_2001 mRNA_2002 mRNA_2003 mRNA_2004 mRNA_2005
10369 10370 10371 10372 10373
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.5 N.D. -2.0 -1.0 +0.2
facs on lipid accumulation Sorted Low BODIPY Gate +0.5 N.D. -3.8 -0.1 +0.8
ypd buoyancy 40 hrs No Buoyancy Separation -1.2 N.D. -0.5 -0.2 +0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.4 N.D. -0.5 -0.5 -0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.7 N.D. +1.0 -0.7 -1.0
growth on ricinoleic acid YNB Glucose -0.4 N.D. +1.0 -0.2 -0.8
auxotrophy YNB Glucose -0.2 N.D. +0.7 +0.3 -1.1
ypd buoyancy 40 hrs High Buoyancy -0.3 N.D. -0.8 +0.1 +0.6
auxotrophy YNB Glucose 75mM Arginine -0.1 N.D. +0.4 +0.5 -1.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.2 N.D. -0.1 -0.2 +0.3
auxotrophy Dropout Complete +0.2 N.D. +0.3 +0.2 -0.6
growth on ypd YPD +0.2 N.D. -0.2 -0.0 +0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.2 N.D. -0.3 -0.2 +0.6
ypd buoyancy 40 hrs Median Buoyancy -0.2 N.D. -0.2 +0.1 +0.6
auxotrophy YNB Glucose 75mM Methionine +0.2 N.D. +0.7 +0.4 -0.6
growth on oleic acid YNB Oleic Acid -0.0 N.D. +0.4 +0.2 +0.2
growth on oleic acid YNB Glucose +0.2 N.D. +0.5 +0.3 -0.2
growth on ricinoleic acid YNB Methylricinoleic Acid +0.4 N.D. +1.6 -0.0 -0.9
growth on ricinoleic acid YNB Ricinoleic Acid +0.8 N.D. +1.5 -0.3 -0.6
ypd buoyancy 40 hrs Low Buoyancy -0.3 N.D. +0.6 +0.3 +1.0
facs on lipid accumulation Sorted High BODIPY Gate +0.2 N.D. +2.2 +0.3 -0.2
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