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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10370 and 10371 are separated by 159 nucleotides
10371 and 10372 are separated by 611 nucleotides
10372 and 10373 are separated by 762 nucleotides
10373 and 10374 are separated by 527 nucleotides
mRNA_2002: 10370 - HMMPfam-NAD(P)-binding Rossmann-like domain-PF13450,SUPERFAMILY--SSF51971, at 712,088 to 714,509
10370
mRNA_2003: 10371 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 714,669 to 717,655
10371
mRNA_2004: 10372 - Hypothetical Protein, at 718,267 to 719,987
10372
mRNA_2005: 10373 - K08286 E2.7.11.- protein-serine/threonine kinase, at 720,750 to 723,688
10373
mRNA_2006: 10374 - K00380 cysJ sulfite reductase (NADPH) flavoprotein alpha-component, at 724,216 to 728,973
10374
Group
Condition
mRNA
_2002
mRNA
_2003
mRNA
_2004
mRNA
_2005
mRNA
_2006
10370
10371
10372
10373
10374
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-3.8
-0.1
+0.8
-1.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-2.0
-1.0
+0.2
-1.6
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.4
+0.5
-1.0
-2.2
auxotrophy
YNB Glucose
N.D.
+0.7
+0.3
-1.1
-2.2
growth on ricinoleic acid
YNB Glucose
N.D.
+1.0
-0.2
-0.8
-2.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.5
-0.5
-0.3
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
-0.2
+0.3
-1.1
growth on oleic acid
YNB Glucose
N.D.
+0.5
+0.3
-0.2
-1.6
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.3
-0.2
+0.6
-1.0
auxotrophy
Dropout Complete
N.D.
+0.3
+0.2
-0.6
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+1.6
-0.0
-0.9
-1.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.8
+0.1
+0.6
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+1.5
-0.3
-0.6
-0.8
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.5
-0.2
+0.2
+0.3
growth on ypd
YPD
N.D.
-0.2
-0.0
+0.1
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.4
+0.2
+0.2
-0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+1.0
-0.7
-1.0
+0.9
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.7
+0.4
-0.6
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
+0.1
+0.6
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+2.2
+0.3
-0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.6
+0.3
+1.0
+0.5
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