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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10372 and 10373 are separated by 762 nucleotides
10373 and 10374 are separated by 527 nucleotides
10374 and 10375 are separated by 238 nucleotides
10375 and 10376 are separated by 253 nucleotides
mRNA_2004: 10372 - Hypothetical Protein, at 718,267 to 719,987
10372
mRNA_2005: 10373 - K08286 E2.7.11.- protein-serine/threonine kinase, at 720,750 to 723,688
10373
mRNA_2006: 10374 - K00380 cysJ sulfite reductase (NADPH) flavoprotein alpha-component, at 724,216 to 728,973
10374
mRNA_2007: 10375 - K15331 TRMT2B, TRM2 tRNA (uracil-5-)-methyltransferase, at 729,212 to 731,398
10375
mRNA_2008: 10376 - K02929 RP-L44e, RPL44 large subunit ribosomal protein L44e, at 731,652 to 732,253
10376
Group
Condition
mRNA
_2004
mRNA
_2005
mRNA
_2006
mRNA
_2007
mRNA
_2008
10372
10373
10374
10375
10376
growth on ricinoleic acid
YNB Glucose
-0.2
-0.8
-2.0
-0.5
N.D.
auxotrophy
YNB Glucose
+0.3
-1.1
-2.2
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.5
-1.0
-2.2
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.0
+0.2
-1.6
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.6
-0.8
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.8
-1.6
-0.8
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.9
-1.0
+0.2
N.D.
growth on oleic acid
YNB Glucose
+0.3
-0.2
-1.6
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.6
-1.0
-0.9
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.3
-0.6
+0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.2
-0.4
-0.8
N.D.
auxotrophy
Dropout Complete
+0.2
-0.6
-0.2
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.3
-1.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
-1.0
+0.9
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
+0.2
-0.9
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.6
-0.2
+0.0
N.D.
growth on ypd
YPD
-0.0
+0.1
-0.1
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.6
-0.2
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.6
-0.2
-0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.2
+0.3
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+1.0
+0.5
-0.0
N.D.
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