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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10374 and 10375 are separated by 238 nucleotides
10375 and 10376 are separated by 253 nucleotides
10376 and 10377 are separated by 847 nucleotides
10377 and 10378 are separated by 351 nucleotides
mRNA_2006: 10374 - K00380 cysJ sulfite reductase (NADPH) flavoprotein alpha-component, at 724,216 to 728,973
10374
mRNA_2007: 10375 - K15331 TRMT2B, TRM2 tRNA (uracil-5-)-methyltransferase, at 729,212 to 731,398
10375
mRNA_2008: 10376 - K02929 RP-L44e, RPL44 large subunit ribosomal protein L44e, at 731,652 to 732,253
10376
mRNA_2009: 10377 - BLAST ankyrin [Cenococcum geophilum 1.58], at 733,101 to 734,076
10377
mRNA_2010: 10378 - KOG2533 Permease of the major facilitator superfamily, at 734,428 to 736,399
10378
Group
Condition
mRNA
_2006
mRNA
_2007
mRNA
_2008
mRNA
_2009
mRNA
_2010
10374
10375
10376
10377
10378
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.6
-0.8
N.D.
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.6
+0.2
N.D.
-0.4
-0.1
growth on ricinoleic acid
YNB Glucose
-2.0
-0.5
N.D.
+0.5
+0.0
growth on oleic acid
YNB Glucose
-1.6
-0.1
N.D.
+0.0
-0.2
auxotrophy
YNB Glucose
-2.2
-0.1
N.D.
+0.9
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-2.2
-0.3
N.D.
+1.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-1.0
-0.9
N.D.
+0.3
+0.4
growth on oleic acid
YNB Oleic Acid
-0.9
-0.0
N.D.
+0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.8
N.D.
-0.0
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
-0.1
N.D.
+1.2
-1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.1
+0.2
N.D.
+0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.2
N.D.
+0.2
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.0
+0.2
N.D.
+1.0
-0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
N.D.
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
+0.2
N.D.
+0.3
-0.2
growth on ypd
YPD
-0.1
-0.2
N.D.
+0.6
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.0
N.D.
+0.7
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.2
N.D.
+0.1
+0.2
auxotrophy
Dropout Complete
-0.2
-0.1
N.D.
+1.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.9
+0.2
N.D.
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.5
-0.0
N.D.
+0.4
+0.2
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