Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 10374 and 10375 are separated by 238 nucleotides10375 and 10376 are separated by 253 nucleotides10376 and 10377 are separated by 847 nucleotides10377 and 10378 are separated by 351 nucleotides mRNA_2006: 10374 - K00380 cysJ sulfite reductase (NADPH) flavoprotein alpha-component, at 724,216 to 728,973 10374 mRNA_2007: 10375 - K15331 TRMT2B, TRM2 tRNA (uracil-5-)-methyltransferase, at 729,212 to 731,398 10375 mRNA_2008: 10376 - K02929 RP-L44e, RPL44 large subunit ribosomal protein L44e, at 731,652 to 732,253 10376 mRNA_2009: 10377 - BLAST ankyrin [Cenococcum geophilum 1.58], at 733,101 to 734,076 10377 mRNA_2010: 10378 - KOG2533 Permease of the major facilitator superfamily, at 734,428 to 736,399 10378
Group Condition mRNA_2006 mRNA_2007 mRNA_2008 mRNA_2009 mRNA_2010
10374 10375 10376 10377 10378
facs on lipid accumulation Sorted Low BODIPY Gate -1.6 -0.8 N.D. -0.1 +0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -1.6 +0.2 N.D. -0.4 -0.1
growth on ricinoleic acid YNB Glucose -2.0 -0.5 N.D. +0.5 +0.0
growth on oleic acid YNB Glucose -1.6 -0.1 N.D. +0.0 -0.2
auxotrophy YNB Glucose -2.2 -0.1 N.D. +0.9 -0.0
auxotrophy YNB Glucose 75mM Arginine -2.2 -0.3 N.D. +1.2 +0.1
facs on lipid accumulation Sorted No BODIPY Gate -1.0 -0.9 N.D. +0.3 +0.4
growth on oleic acid YNB Oleic Acid -0.9 -0.0 N.D. +0.1 -0.3
facs on lipid accumulation Sorted High BODIPY Gate -0.4 -0.8 N.D. -0.0 +0.4
growth on ricinoleic acid YNB Ricinoleic Acid -0.8 -0.1 N.D. +1.2 -1.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy -1.1 +0.2 N.D. +0.1 +0.2
ypd buoyancy 40 hrs High Buoyancy -0.2 -0.2 N.D. +0.2 -0.2
growth on ricinoleic acid YNB Methylricinoleic Acid -1.0 +0.2 N.D. +1.0 -0.6
ypd buoyancy 40 hrs Median Buoyancy -0.2 -0.1 N.D. +0.1 +0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.6 +0.2 N.D. +0.3 -0.2
growth on ypd YPD -0.1 -0.2 N.D. +0.6 -0.0
auxotrophy YNB Glucose 75mM Methionine -0.2 +0.0 N.D. +0.7 +0.1
ypd buoyancy 40 hrs No Buoyancy Separation +0.3 +0.2 N.D. +0.1 +0.2
auxotrophy Dropout Complete -0.2 -0.1 N.D. +1.1 +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.9 +0.2 N.D. -0.1 -0.1
ypd buoyancy 40 hrs Low Buoyancy +0.5 -0.0 N.D. +0.4 +0.2
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