Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 10375 and 10376 are separated by 253 nucleotides10376 and 10377 are separated by 847 nucleotides10377 and 10378 are separated by 351 nucleotides10378 and 10379 are separated by 948 nucleotides mRNA_2007: 10375 - K15331 TRMT2B, TRM2 tRNA (uracil-5-)-methyltransferase, at 729,212 to 731,398 10375 mRNA_2008: 10376 - K02929 RP-L44e, RPL44 large subunit ribosomal protein L44e, at 731,652 to 732,253 10376 mRNA_2009: 10377 - BLAST ankyrin [Cenococcum geophilum 1.58], at 733,101 to 734,076 10377 mRNA_2010: 10378 - KOG2533 Permease of the major facilitator superfamily, at 734,428 to 736,399 10378 mRNA_2011: 10379 - KOG2533 Permease of the major facilitator superfamily, at 737,348 to 740,033 10379
Group Condition mRNA_2007 mRNA_2008 mRNA_2009 mRNA_2010 mRNA_2011
10375 10376 10377 10378 10379
facs on lipid accumulation Sorted Low BODIPY Gate -0.8 N.D. -0.1 +0.1 -0.1
facs on lipid accumulation Sorted High BODIPY Gate -0.8 N.D. -0.0 +0.4 +0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.2 N.D. -0.4 -0.1 -0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.9 N.D. +0.3 +0.4 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.2 N.D. -0.1 -0.1 -0.3
growth on oleic acid YNB Oleic Acid -0.0 N.D. +0.1 -0.3 -0.0
growth on oleic acid YNB Glucose -0.1 N.D. +0.0 -0.2 +0.1
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 N.D. +1.2 -1.0 -0.2
ypd buoyancy 40 hrs High Buoyancy -0.2 N.D. +0.2 -0.2 +0.0
growth on ricinoleic acid YNB Glucose -0.5 N.D. +0.5 +0.0 -0.1
ypd buoyancy 40 hrs Median Buoyancy -0.1 N.D. +0.1 +0.0 +0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.2 N.D. +0.3 -0.2 -0.0
growth on ricinoleic acid YNB Methylricinoleic Acid +0.2 N.D. +1.0 -0.6 -0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.2 N.D. +0.1 +0.2 -0.1
ypd buoyancy 40 hrs No Buoyancy Separation +0.2 N.D. +0.1 +0.2 +0.2
growth on ypd YPD -0.2 N.D. +0.6 -0.0 +0.2
ypd buoyancy 40 hrs Low Buoyancy -0.0 N.D. +0.4 +0.2 +0.3
auxotrophy YNB Glucose -0.1 N.D. +0.9 -0.0 +0.1
auxotrophy YNB Glucose 75mM Arginine -0.3 N.D. +1.2 +0.1 -0.0
auxotrophy Dropout Complete -0.1 N.D. +1.1 +0.1 +0.0
auxotrophy YNB Glucose 75mM Methionine +0.0 N.D. +0.7 +0.1 +0.3
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