Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
10377 and 10378 are separated by 351 nucleotides
10378 and 10379 are separated by 948 nucleotides
10379 and 10380 are separated by 601 nucleotides
10380 and 10381 are separated by 264 nucleotides
mRNA_2009: 10377 - BLAST ankyrin [Cenococcum geophilum 1.58], at 733,101 to 734,076
10377
mRNA_2010: 10378 - KOG2533 Permease of the major facilitator superfamily, at 734,428 to 736,399
10378
mRNA_2011: 10379 - KOG2533 Permease of the major facilitator superfamily, at 737,348 to 740,033
10379
mRNA_2012: 10380 - K00681 ggt gamma-glutamyltranspeptidase / glutathione hydrolase, at 740,635 to 742,993
10380
mRNA_2013: 10381 - SUPERFAMILY--SSF49899, at 743,258 to 744,708
10381
Group
Condition
mRNA
_2009
mRNA
_2010
mRNA
_2011
mRNA
_2012
mRNA
_2013
10377
10378
10379
10380
10381
growth on oleic acid
YNB Oleic Acid
+0.1
-0.3
-0.0
-0.5
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.1
-0.1
-0.4
+0.1
growth on oleic acid
YNB Glucose
+0.0
-0.2
+0.1
-0.6
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
-0.1
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.1
-0.3
+0.3
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
+0.0
-0.3
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.0
-0.6
-0.2
-0.5
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.2
-1.0
-0.2
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
-0.1
-0.2
-0.2
growth on ricinoleic acid
YNB Glucose
+0.5
+0.0
-0.1
-0.4
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
+0.1
-0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.4
+0.1
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.2
-0.0
+0.4
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.4
-0.1
-0.2
+0.0
auxotrophy
Dropout Complete
+1.1
+0.1
+0.0
-0.5
-0.3
growth on ypd
YPD
+0.6
-0.0
+0.2
-0.3
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.2
+0.2
+0.4
-0.2
auxotrophy
YNB Glucose
+0.9
-0.0
+0.1
-0.2
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.2
+0.3
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.7
+0.1
+0.3
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+1.2
+0.1
-0.0
-0.0
+0.1
remove
mRNA_2009
plot
remove
mRNA_2010
plot
remove
mRNA_2011
remove
mRNA_2012
plot
remove
mRNA_2013
plot