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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10378 and 10379 are separated by 948 nucleotides
10379 and 10380 are separated by 601 nucleotides
10380 and 10381 are separated by 264 nucleotides
10381 and 10382 are separated by 707 nucleotides
mRNA_2010: 10378 - KOG2533 Permease of the major facilitator superfamily, at 734,428 to 736,399
10378
mRNA_2011: 10379 - KOG2533 Permease of the major facilitator superfamily, at 737,348 to 740,033
10379
mRNA_2012: 10380 - K00681 ggt gamma-glutamyltranspeptidase / glutathione hydrolase, at 740,635 to 742,993
10380
mRNA_2013: 10381 - SUPERFAMILY--SSF49899, at 743,258 to 744,708
10381
mRNA_2014: 10382 - K20697 GNBP1 gram-negative bacteria-binding protein 1, at 745,416 to 747,550
10382
Group
Condition
mRNA
_2010
mRNA
_2011
mRNA
_2012
mRNA
_2013
mRNA
_2014
10378
10379
10380
10381
10382
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.2
-0.5
-0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.0
-0.2
-0.1
-0.2
+0.3
growth on oleic acid
YNB Oleic Acid
-0.3
-0.0
-0.5
-0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.0
-0.3
-0.3
-0.2
growth on oleic acid
YNB Glucose
-0.2
+0.1
-0.6
-0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.1
-0.5
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.3
+0.3
-0.4
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.1
-0.4
+0.1
+0.0
growth on ricinoleic acid
YNB Glucose
+0.0
-0.1
-0.4
-0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
-0.0
-0.1
-0.1
auxotrophy
Dropout Complete
+0.1
+0.0
-0.5
-0.3
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.1
-0.2
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.0
+0.4
-0.2
-0.1
growth on ypd
YPD
-0.0
+0.2
-0.3
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.1
-0.2
+0.0
-0.0
auxotrophy
YNB Glucose
-0.0
+0.1
-0.2
+0.0
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.3
+0.2
-0.3
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.3
-0.1
-0.2
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.1
-0.1
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.0
-0.0
+0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.2
+0.4
-0.2
+0.2
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