Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 10379 and 10380 are separated by 601 nucleotides10380 and 10381 are separated by 264 nucleotides10381 and 10382 are separated by 707 nucleotides10382 and 10383 overlap by 10 nucleotides mRNA_2011: 10379 - KOG2533 Permease of the major facilitator superfamily, at 737,348 to 740,033 10379 mRNA_2012: 10380 - K00681 ggt gamma-glutamyltranspeptidase / glutathione hydrolase, at 740,635 to 742,993 10380 mRNA_2013: 10381 - SUPERFAMILY--SSF49899, at 743,258 to 744,708 10381 mRNA_2014: 10382 - K20697 GNBP1 gram-negative bacteria-binding protein 1, at 745,416 to 747,550 10382 mRNA_2015: 10383 - Hypothetical Protein, at 747,541 to 748,131 10383
Group Condition mRNA_2011 mRNA_2012 mRNA_2013 mRNA_2014 mRNA_2015
10379 10380 10381 10382 10383
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 -0.5 -0.2 +0.1 -0.1
growth on oleic acid YNB Oleic Acid -0.0 -0.5 -0.2 +0.0 -0.2
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 -0.5 -0.1 -0.1 -0.2
ypd buoyancy 40 hrs High Buoyancy +0.0 -0.3 -0.3 -0.2 -0.0
growth on oleic acid YNB Glucose +0.1 -0.6 -0.2 +0.1 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.3 +0.3 -0.4 +0.0 -0.1
auxotrophy Dropout Complete +0.0 -0.5 -0.3 +0.5 -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 -0.4 +0.1 +0.0 -0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 -0.2 -0.2 +0.1 +0.0
growth on ricinoleic acid YNB Glucose -0.1 -0.4 -0.1 +0.3 +0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.1 -0.2 +0.0 -0.0 +0.1
growth on ricinoleic acid YNB Ricinoleic Acid -0.2 -0.1 -0.2 +0.3 +0.1
ypd buoyancy 40 hrs Median Buoyancy +0.1 -0.0 -0.1 -0.1 +0.1
growth on ypd YPD +0.2 -0.3 +0.1 +0.1 -0.2
facs on lipid accumulation Sorted High BODIPY Gate +0.1 -0.1 -0.1 +0.2 -0.0
auxotrophy YNB Glucose +0.1 -0.2 +0.0 +0.3 +0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.0 +0.4 -0.2 -0.1 +0.1
auxotrophy YNB Glucose 75mM Arginine -0.0 -0.0 +0.1 +0.3 -0.1
ypd buoyancy 40 hrs Low Buoyancy +0.3 +0.2 -0.3 -0.1 +0.1
auxotrophy YNB Glucose 75mM Methionine +0.3 -0.1 -0.2 +0.2 +0.2
ypd buoyancy 40 hrs No Buoyancy Separation +0.2 +0.4 -0.2 +0.2 +0.4
remove
mRNA_2011
plot
remove
mRNA_2012
plot
remove
mRNA_2013
remove
mRNA_2014
plot
remove
mRNA_2015
plot