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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10380 and 10381 are separated by 264 nucleotides
10381 and 10382 are separated by 707 nucleotides
10382 and 10383 overlap by 10 nucleotides
10383 and 10384 are separated by 73 nucleotides
mRNA_2012: 10380 - K00681 ggt gamma-glutamyltranspeptidase / glutathione hydrolase, at 740,635 to 742,993
10380
mRNA_2013: 10381 - SUPERFAMILY--SSF49899, at 743,258 to 744,708
10381
mRNA_2014: 10382 - K20697 GNBP1 gram-negative bacteria-binding protein 1, at 745,416 to 747,550
10382
mRNA_2015: 10383 - Hypothetical Protein, at 747,541 to 748,131
10383
mRNA_2016: 10384 - HMMPfam-Glycosyl transferase family group 2-PF13632,SUPERFAMILY--SSF53448, at 748,205 to 751,738
10384
Group
Condition
mRNA
_2012
mRNA
_2013
mRNA
_2014
mRNA
_2015
mRNA
_2016
10380
10381
10382
10383
10384
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.1
-0.1
-0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.3
-0.2
-0.0
-0.1
growth on oleic acid
YNB Oleic Acid
-0.5
-0.2
+0.0
-0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.2
+0.1
-0.1
+0.2
growth on oleic acid
YNB Glucose
-0.6
-0.2
+0.1
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.0
-0.0
+0.1
-0.4
auxotrophy
Dropout Complete
-0.5
-0.3
+0.5
-0.1
+0.1
growth on ypd
YPD
-0.3
+0.1
+0.1
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.4
+0.0
-0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.1
+0.2
-0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.3
-0.1
+0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
-0.1
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.1
+0.0
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.2
+0.1
+0.0
+0.1
growth on ricinoleic acid
YNB Glucose
-0.4
-0.1
+0.3
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.2
-0.1
+0.1
-0.1
auxotrophy
YNB Glucose
-0.2
+0.0
+0.3
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.2
+0.2
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.1
+0.3
-0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.2
+0.3
+0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.2
+0.2
+0.4
-0.1
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