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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10383 and 10384 are separated by 73 nucleotides
10384 and 10385 are separated by 756 nucleotides
10385 and 10386 are separated by 703 nucleotides
10386 and 10387 are separated by 280 nucleotides
mRNA_2015: 10383 - Hypothetical Protein, at 747,541 to 748,131
10383
mRNA_2016: 10384 - HMMPfam-Glycosyl transferase family group 2-PF13632,SUPERFAMILY--SSF53448, at 748,205 to 751,738
10384
mRNA_2017: 10385 - K12600 SKI3, TTC37 superkiller protein 3, at 752,495 to 757,859
10385
mRNA_2018: 10386 - K09554 CDC37 cell division cycle protein 37, at 758,563 to 760,344
10386
mRNA_2019: 10387 - K07088 K07088 uncharacterized protein, at 760,625 to 762,571
10387
Group
Condition
mRNA
_2015
mRNA
_2016
mRNA
_2017
mRNA
_2018
mRNA
_2019
10383
10384
10385
10386
10387
auxotrophy
Dropout Complete
-0.1
+0.1
-1.0
N.D.
-0.2
auxotrophy
YNB Glucose
+0.0
+0.1
-0.9
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.4
-0.7
N.D.
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.3
-0.9
N.D.
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.1
-0.3
N.D.
-0.4
growth on ypd
YPD
-0.2
+0.0
-0.8
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.2
-0.3
N.D.
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.2
-1.3
N.D.
+0.7
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
-0.5
N.D.
-0.1
growth on oleic acid
YNB Glucose
-0.1
+0.2
-0.4
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.1
-0.7
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
-0.5
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.1
-1.0
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.1
-0.2
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.1
-0.1
N.D.
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.3
-0.2
N.D.
-0.4
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
+0.2
N.D.
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
+0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.1
-0.1
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
+0.2
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.1
+0.8
N.D.
+0.7
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