Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 10391 and 10392 are separated by 173 nucleotides10392 and 10393 are separated by 390 nucleotides10393 and 10394 are separated by 314 nucleotides10394 and 10395 are separated by 307 nucleotides mRNA_2023: 10391 - K04718 SPHK sphingosine kinase, at 767,575 to 770,006 10391 mRNA_2024: 10392 - K15979 SND1 staphylococcal nuclease domain-containing protein 1, at 770,180 to 773,514 10392 mRNA_2025: 10393 - SUPERFAMILY--SSF53474, at 773,905 to 776,623 10393 mRNA_2026: 10394 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 776,938 to 779,956 10394 mRNA_2027: 10395 - K07208 RHEB Ras homolog enriched in brain, at 780,264 to 781,182 10395
Group Condition mRNA_2023 mRNA_2024 mRNA_2025 mRNA_2026 mRNA_2027
10391 10392 10393 10394 10395
facs on lipid accumulation Sorted Low BODIPY Gate +0.1 -0.3 -0.3 -0.9 N.D.
growth on oleic acid YNB Oleic Acid -0.2 -0.2 -0.3 -0.2 N.D.
growth on oleic acid YNB Glucose -0.5 -0.3 -0.2 -0.0 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid +0.3 -0.6 -0.4 -0.3 N.D.
auxotrophy Dropout Complete -0.3 -0.2 -0.3 -0.1 N.D.
auxotrophy YNB Glucose 75mM Arginine +0.1 -0.4 -0.3 -0.1 N.D.
auxotrophy YNB Glucose -0.2 -0.3 -0.3 -0.1 N.D.
facs on lipid accumulation Sorted High BODIPY Gate -0.3 -0.2 +0.0 -0.3 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation -0.4 +0.2 +0.0 -0.5 N.D.
ypd buoyancy 40 hrs Low Buoyancy -0.1 +0.2 -0.5 -0.3 N.D.
auxotrophy YNB Glucose 75mM Methionine -0.0 -0.2 -0.3 +0.0 N.D.
growth on ricinoleic acid YNB Glucose +0.2 -0.5 -0.2 -0.0 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.2 -0.2 -0.1 -0.3 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid +0.5 -0.6 -0.1 -0.2 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.1 -0.2 -0.2 +0.0 N.D.
ypd buoyancy 40 hrs High Buoyancy +0.4 +0.2 -0.4 -0.4 N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.2 +0.3 -0.2 -0.3 N.D.
facs on lipid accumulation Sorted No BODIPY Gate +0.0 +0.2 -0.0 -0.1 N.D.
growth on ypd YPD +0.2 -0.0 +0.2 -0.1 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.1 +0.0 +0.0 +0.2 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.5 -0.1 +0.1 -0.0 N.D.
remove
mRNA_2023
plot
remove
mRNA_2024
plot
remove
mRNA_2025
remove
mRNA_2026
plot
remove
mRNA_2027
plot