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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10392 and 10393 are separated by 390 nucleotides
10393 and 10394 are separated by 314 nucleotides
10394 and 10395 are separated by 307 nucleotides
10395 and 10396 are separated by 958 nucleotides
mRNA_2024: 10392 - K15979 SND1 staphylococcal nuclease domain-containing protein 1, at 770,180 to 773,514
10392
mRNA_2025: 10393 - SUPERFAMILY--SSF53474, at 773,905 to 776,623
10393
mRNA_2026: 10394 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 776,938 to 779,956
10394
mRNA_2027: 10395 - K07208 RHEB Ras homolog enriched in brain, at 780,264 to 781,182
10395
mRNA_2028: 10396 - HMMPfam-TENA/THI-4/PQQC family-PF03070,SUPERFAMILY--SSF48613, at 782,141 to 783,596
10396
Group
Condition
mRNA
_2024
mRNA
_2025
mRNA
_2026
mRNA
_2027
mRNA
_2028
10392
10393
10394
10395
10396
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.3
-0.9
N.D.
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.4
-0.3
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.3
-0.1
N.D.
-0.3
growth on oleic acid
YNB Oleic Acid
-0.2
-0.3
-0.2
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.4
-0.4
N.D.
-0.3
auxotrophy
YNB Glucose
-0.3
-0.3
-0.1
N.D.
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.5
-0.3
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.3
+0.0
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
-0.5
-0.2
-0.0
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-0.1
-0.2
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.0
-0.3
N.D.
-0.2
auxotrophy
Dropout Complete
-0.2
-0.3
-0.1
N.D.
-0.0
growth on oleic acid
YNB Glucose
-0.3
-0.2
-0.0
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.2
+0.0
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.2
-0.3
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.0
-0.5
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.0
-0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.1
-0.3
N.D.
+0.5
growth on ypd
YPD
-0.0
+0.2
-0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
-0.0
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.0
+0.2
N.D.
+0.3
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