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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10394 and 10395 are separated by 307 nucleotides
10395 and 10396 are separated by 958 nucleotides
10396 and 10397 are separated by 1135 nucleotides
10397 and 10398 are separated by 288 nucleotides
mRNA_2026: 10394 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 776,938 to 779,956
10394
mRNA_2027: 10395 - K07208 RHEB Ras homolog enriched in brain, at 780,264 to 781,182
10395
mRNA_2028: 10396 - HMMPfam-TENA/THI-4/PQQC family-PF03070,SUPERFAMILY--SSF48613, at 782,141 to 783,596
10396
mRNA_2029: 10397 - K07088 K07088 uncharacterized protein, at 784,732 to 786,233
10397
mRNA_2030: 10398 - KOG2260 Cell division cycle 37 protein, CDC37, at 786,522 to 787,329
10398
Group
Condition
mRNA
_2026
mRNA
_2027
mRNA
_2028
mRNA
_2029
mRNA
_2030
10394
10395
10396
10397
10398
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
-0.2
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
-0.3
-0.3
-0.1
auxotrophy
YNB Glucose
-0.1
N.D.
-0.3
-0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
N.D.
-0.4
+0.1
+0.4
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
-0.2
-0.4
+0.1
auxotrophy
Dropout Complete
-0.1
N.D.
-0.0
-0.4
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
N.D.
-0.1
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
-0.3
-0.2
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.3
N.D.
-0.1
+0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.4
N.D.
-0.3
+0.4
-0.1
growth on ricinoleic acid
YNB Glucose
-0.0
N.D.
-0.1
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
-0.2
-0.1
+0.4
growth on oleic acid
YNB Glucose
-0.0
N.D.
+0.0
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
N.D.
-0.1
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
N.D.
+0.5
-0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.3
N.D.
-0.3
+0.4
+0.2
growth on ypd
YPD
-0.1
N.D.
-0.1
-0.1
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
+0.1
-0.0
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
N.D.
+0.1
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
N.D.
+0.3
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
+0.3
+0.3
+0.1
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