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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10396 and 10397 are separated by 1135 nucleotides
10397 and 10398 are separated by 288 nucleotides
10398 and 10399 are separated by 5302 nucleotides
10399 and 10400 are separated by 1867 nucleotides
mRNA_2028: 10396 - HMMPfam-TENA/THI-4/PQQC family-PF03070,SUPERFAMILY--SSF48613, at 782,141 to 783,596
10396
mRNA_2029: 10397 - K07088 K07088 uncharacterized protein, at 784,732 to 786,233
10397
mRNA_2030: 10398 - KOG2260 Cell division cycle 37 protein, CDC37, at 786,522 to 787,329
10398
mRNA_2031: 10399 - BLAST TPR-like protein [Auricularia subglabra TFB-10046..., at 792,632 to 792,952
10399
mRNA_2032: 10400 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 794,820 to 796,212
10400
Group
Condition
mRNA
_2028
mRNA
_2029
mRNA
_2030
mRNA
_2031
mRNA
_2032
10396
10397
10398
10399
10400
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.1
+0.4
+0.2
-1.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.4
-0.1
+0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.1
+0.4
+0.2
-1.1
auxotrophy
Dropout Complete
-0.0
-0.4
-0.1
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.3
-0.2
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.3
-0.1
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.0
-0.2
+0.1
-0.5
auxotrophy
YNB Glucose
-0.3
-0.3
-0.1
+0.2
+0.3
growth on ypd
YPD
-0.1
-0.1
+0.4
-0.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.2
-0.4
+0.1
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.2
+0.0
+0.3
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.4
-0.1
-0.0
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
-0.1
-0.1
+0.7
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.2
-0.0
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.0
-0.0
+0.3
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
-0.1
-0.1
+0.0
+0.7
growth on oleic acid
YNB Glucose
+0.0
-0.1
+0.0
+0.3
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.3
+0.1
+0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.4
+0.2
+0.2
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.3
+0.3
-0.1
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.0
+0.2
-0.1
+0.9
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