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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10398 and 10399 are separated by 5302 nucleotides
10399 and 10400 are separated by 1867 nucleotides
10400 and 10401 are separated by 674 nucleotides
10401 and 10402 are separated by 825 nucleotides
mRNA_2030: 10398 - KOG2260 Cell division cycle 37 protein, CDC37, at 786,522 to 787,329
10398
mRNA_2031: 10399 - BLAST TPR-like protein [Auricularia subglabra TFB-10046..., at 792,632 to 792,952
10399
mRNA_2032: 10400 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 794,820 to 796,212
10400
mRNA_2033: 10401 - K09595 HM13 minor histocompatibility antigen H13, at 796,887 to 798,543
10401
mRNA_2034: 10402 - HMMPfam-Spherulation-specific family 4-PF12138, at 799,369 to 800,999
10402
Group
Condition
mRNA
_2030
mRNA
_2031
mRNA
_2032
mRNA
_2033
mRNA
_2034
10398
10399
10400
10401
10402
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.2
-1.1
-1.0
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.1
-0.3
-0.7
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.2
-1.2
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.1
-0.5
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.3
-0.1
-0.2
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.2
-0.1
-0.2
-0.1
auxotrophy
YNB Glucose
-0.1
+0.2
+0.3
-0.9
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
+0.1
-0.4
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
+0.3
-0.3
-0.3
auxotrophy
Dropout Complete
-0.1
+0.3
-0.2
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.2
+0.3
-0.4
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.1
+0.5
-1.2
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
+0.0
-0.0
+0.0
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
+0.2
-0.0
+0.1
growth on oleic acid
YNB Glucose
+0.0
+0.3
+0.4
+0.0
-0.1
growth on ypd
YPD
+0.4
-0.1
-0.2
-0.0
+0.7
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.3
+0.2
+0.0
+0.3
growth on ricinoleic acid
YNB Glucose
-0.1
+0.0
+0.7
-0.4
+0.6
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.2
+0.5
-0.2
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
+0.7
-0.0
+1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.1
+0.9
-0.1
+1.2
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