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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10401 and 10402 are separated by 825 nucleotides
10402 and 10403 are separated by 171 nucleotides
10403 and 10404 are separated by 119 nucleotides
10404 and 10405 are separated by 771 nucleotides
mRNA_2033: 10401 - K09595 HM13 minor histocompatibility antigen H13, at 796,887 to 798,543
10401
mRNA_2034: 10402 - HMMPfam-Spherulation-specific family 4-PF12138, at 799,369 to 800,999
10402
mRNA_2035: 10403 - K14824 ERB1, BOP1 ribosome biogenesis protein ERB1, at 801,171 to 804,014
10403
mRNA_2036: 10404 - HMMPfam-Alpha and gamma adaptin binding protein p34-PF10199, at 804,134 to 805,617
10404
mRNA_2037: 10405 - Hypothetical Protein, at 806,389 to 807,325
10405
Group
Condition
mRNA
_2033
mRNA
_2034
mRNA
_2035
mRNA
_2036
mRNA
_2037
10401
10402
10403
10404
10405
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
-0.6
N.D.
-0.5
-0.6
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.2
N.D.
-1.4
-0.1
auxotrophy
Dropout Complete
-0.2
+0.2
N.D.
-1.3
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.4
N.D.
-0.7
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.1
N.D.
-0.6
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
-0.2
N.D.
+0.2
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.3
N.D.
-0.4
-0.1
auxotrophy
YNB Glucose
-0.9
+0.1
N.D.
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.2
N.D.
-0.5
+0.0
growth on oleic acid
YNB Glucose
+0.0
-0.1
N.D.
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.5
N.D.
+0.3
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.3
N.D.
+0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-1.2
+0.6
N.D.
+0.4
-0.3
growth on oleic acid
YNB Oleic Acid
-0.0
+0.1
N.D.
-0.0
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.3
N.D.
-0.6
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.4
N.D.
-0.2
-0.0
growth on ypd
YPD
-0.0
+0.7
N.D.
-0.0
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.0
N.D.
+0.7
-0.2
growth on ricinoleic acid
YNB Glucose
-0.4
+0.6
N.D.
+0.8
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+1.0
N.D.
+0.3
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+1.2
N.D.
+0.5
+0.3
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